Article
Immunology
Mei Xia, Azra Blazevic, Andrew Fiore-Gartland, Daniel F. Hoft
Summary: In this study, the effects of BCG vaccination on γδ T cell responses were investigated. TCR repertoire sequencing revealed minimal changes in the diversity and distribution of TCR clones after vaccination, but identified specific clonotypes that significantly expanded or contracted. These findings provide new insights into the role of γδ T cells in Mycobacterium tuberculosis immunity.
FRONTIERS IN IMMUNOLOGY
(2023)
Article
Immunology
Mikiya Tsunoda, Hiroyasu Aoki, Haruka Shimizu, Shigeyuki Shichino, Kouji Matsushima, Satoshi Ueha
Summary: Temporal analysis of T cell receptor (TCR) repertoire is important for monitoring changes in antigen-specific T cells in cancer patients. However, lack of experimental models for temporal analysis within a homogeneous population limits understanding of the relationship between TCR repertoire changes and antitumor responses. Bilateral tumor model showed highly similar T-cell clones in bilateral tumors and different patterns in draining lymph nodes, suggesting independent induction of tumor-reactive T cell clones in each lymph node.
FRONTIERS IN IMMUNOLOGY
(2021)
Article
Cell Biology
D. Manchorova, M. Papadopoulou, M. Alexandrova, V. Dimitrova, L. Djerov, S. Zapryanova, P. Dimitrova, I. Vangelov, D. Vermijlen, T. Dimova
Summary: In this study, the researchers investigated γδ T cells at the maternal-fetal interface during early and late gestation and compared them with paired blood samples using flow cytometry and TCR high-throughput sequencing. They found that decidual γδ T cells exhibit a specific and dynamic pattern of cytotoxic mediators, Th1 cytokines, and TCR repertoire, indicating an important role for these unconventional T cells in ensuring a healthy pregnancy in humans.
CELLULAR IMMUNOLOGY
(2022)
Article
Oncology
Katiri J. Snyder, Hannah K. Choe, Yandi Gao, Natalie E. Sell, Kara M. Braunreiter, Nina C. Zitzer, Lotus Neidemire-Colley, Sonu Kalyan, Adrienne M. Dorrance, Andrea Keller, Maria M. Mihaylova, Satishkumar Singh, Lalit Sehgal, Gideon Bollag, Yan Ma, Ben Powell, Steven M. Devine, Parvathi Ranganathan
Summary: Acute graft-versus-host disease (GVHD) is a major cause of non-relapse mortality following allogeneic hematopoietic cell transplantation. Inhibiting BET proteins shows promise in improving survival and reducing disease progression in acute GVHD.
FRONTIERS IN ONCOLOGY
(2021)
Article
Biotechnology & Applied Microbiology
Robert Dixon, Stephen G. Preston, Stefan Dascalu, Patrik G. Flammer, Steven R. Fiddaman, Kirstie McLoughlin, Amy Boyd, Jiri Volf, Ivan Rychlik, Michael B. Bonsall, Bernd Kaspers, Adrian L. Smith
Summary: This study reveals that chicken TCR gamma locus has undergone tandem duplication events that have shaped its evolution. Repertoire sequencing shows large differences in the usage of individual TRGV genes across various tissues, with TRGV3.3 dominating every tissue. The application of repertoire analysis in chickens with a high circulating gamma delta phenotype is important for understanding the functional diversity of these cells and their potential in improving health.
Article
Immunology
Chenfeng He, Michael J. Malone, Ben S. Wendel, Ke-Yue Ma, Daniel Del Alcazar, David B. Weiner, Philip L. De Jager, Perla M. Del Rio-Estrada, Yuria Ablanedo-Terrazas, Gustavo Reyes-Teran, Laura F. Su, Ning Jiang
Summary: Follicular-helper T cells, a vital part of adaptive immunity, have complex and plastic functions, but study limitations have hindered a comprehensive understanding. CXCR3-expressing T-FH cells in chronic infection show abnormal accumulation in lymphoid tissues, suggesting potential functional differences that may enhance defense.
FRONTIERS IN IMMUNOLOGY
(2022)
Article
Biochemical Research Methods
Shirit Dvorkin, Reut Levi, Yoram Louzoun
Summary: The study introduces an autoencoder named ELATE to represent T cell receptors as real vectors for characterizing donors and specific receptors. By combining distance conserving autoencoders and Kernel Density Estimates, local repertoire density can be estimated to study repertoire properties.
PLOS COMPUTATIONAL BIOLOGY
(2021)
Article
Medicine, Research & Experimental
Shangyi Wang, Mina Kozai, Hironobu Mita, Zimeng Cai, Md Abdul Masum, Osamu Ichii, Kensuke Takada, Mutsumi Inaba
Summary: Psoriasis is a chronic inflammatory skin disease characterized by epidermal hyperplasia and cellular infiltration. Recent research has highlighted the crucial role of gamma delta T17 cells in psoriasis pathogenesis, revealing their involvement in regulation through REV-ERBs. Synthetic REV-ERB agonists can suppress gamma delta T17 cells both in vitro and in vivo, providing a novel therapeutic approach for psoriasis targeting REV-ERBs in gamma delta T17 cells.
BIOMEDICINE & PHARMACOTHERAPY
(2021)
Article
Multidisciplinary Sciences
Akul Singhania, John Pham, Rekha Dhanwani, April Frazier, Juliana Rezende Dutra, Karen S. Marder, Elizabeth Phillips, Simon Mallal, Amy W. Amara, David G. Standaert, David Sulzer, Bjoern Peters, Alessandro Sette, Cecilia S. Lindestam Arlehamn
Summary: The study characterized the TCR repertoire of alpha-syn-specific T cells in individuals with Parkinson's disease for the first time. The findings showed that the TCR repertoire was specific to each PD patient, with no shared TCRs among patients defined.
SCIENTIFIC REPORTS
(2021)
Article
Environmental Sciences
Lei Bao, Changfu Hao, Juan Wang, Feifei Guo, Zihan Geng, Di Wang, Youliang Zhao, Yiping Li, Wu Yao
Summary: Exposure to sensitizer is hazardous to human health, and evaluating the sensitization of sensitizer is crucial. A co-culture model of Mo-DCs and T cells was used to assess the sensitization of DNCB, revealing alterations in DCs and T cells in sensitization rats. DNCB exposure potentiated alterations in Mo-DCs and the TCR repertoire, offering innovative ideas for sensitization evaluation.
ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY
(2021)
Article
Biochemistry & Molecular Biology
Anastasiia Kalinina, Nadezda Persiyantseva, Olga Britanova, Ksenia Lupyr, Irina Shagina, Ludmila Khromykh, Dmitry Kazansky
Summary: By studying an experimental mouse tumor model, it was found that memory T cells are a better source for therapeutic TCRs, leading to better treatment outcomes. The results of this study contribute to the development of TCR-modified T cell products based on TCR chain centricity.
COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL
(2023)
Review
Immunology
Gang Yang, Junxiang Wang, Ping Sun, Jian Qin, Xiaoyun Yang, Daxiang Chen, Yunhui Zhang, Nanshan Zhong, Zhongfang Wang
Summary: This review summarizes the immune response features of immunodominant epitope-specific T cells targeting different SRAS-CoV-2 proteome structures after infection and vaccination, and analyzes the epitope immunodominance hierarchy in combination with multiple epitope-specific T cell attributes and TCR repertoire characteristics. The review also discusses the significant implications of cross-reactive T cells toward HCoVs, SRAS-CoV-2, and variants of concern, especially Omicron. This review may be essential for mapping the landscape of T cell responses toward SARS-CoV-2 and optimizing the current vaccine strategy.
FRONTIERS IN IMMUNOLOGY
(2023)
Article
Biochemistry & Molecular Biology
Kerry A. Mullan, Justin B. Zhang, Claerwen M. Jones, Shawn J. R. Goh, Jerico Revote, Patricia T. Illing, Anthony W. Purcell, Nicole L. La Gruta, Chen Li, Nicole A. Mifsud
Summary: This article introduces a web tool called "TCR_Explore" that helps users analyze T cell receptor data from both Sanger sequencing and next generation sequencing platforms. The tool includes automated quality control steps for Sanger sequencing and allows for the generation of publication-ready figures for different sequencing platforms. Users can interact with the web application at https://tcr-explore.erc.monash.edu.
COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL
(2023)
Article
Biochemistry & Molecular Biology
Junying Zhang, Yu Wang, Haili Yu, Gang Chen, Liting Wang, Fang Liu, Jiangbei Yuan, Qingshan Ni, Xuefeng Xia, Ying Wan
Summary: This study investigated the TCR repertoires of sixteen tissues in healthy mice using high-throughput TCR sequencing, revealing a skewed TCR repertoire in the small intestine compartment and a higher abundance of public clonotypes in small intestinal CD4 + T cells compared to lymph nodes. These findings provide valuable reference data for manipulating T cell responses against infection and vaccination.
MOLECULAR IMMUNOLOGY
(2021)
Review
Immunology
Annaliese Clauze, Yoshimi Enose-Akahata, Steven Jacobson
Summary: This article reviews the research on T cell receptor repertoires and HTLV-1-specific clonotypes in HTLV-1-associated diseases ATL and HAM/TSP and discusses the implications of TCR clonal expansions on the progression and treatment of HTLV-1-associated diseases.
FRONTIERS IN IMMUNOLOGY
(2022)