GUIDING PROBABILISTIC SEARCH OF THE PROTEIN CONFORMATIONAL SPACE WITH STRUCTURAL PROFILES

IN SEARCH OF THE PROTEIN NATIVE STATE WITH A PROBABILISTIC SAMPLING APPROACH

(2011) BRIAN OLSON et al.   Journal of Bioinformatics and Computational Biology

Guiding the Search for Native-like Protein Conformations with an Ab-initio Tree-based Exploration

(2010) Amarda Shehu et al.   INTERNATIONAL JOURNAL OF ROBOTICS RESEARCH

Restriction versus guidance in protein structure prediction

(2009) J. A. Hegler et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Multiscale characterization of protein conformational ensembles

(2009) Amarda Shehu et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Efficient identification of near-native conformations in ab initio protein structure prediction using structural profiles

(2009) Katrin Wolff et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

A stochastic method for the reconstruction of protein structures from one-dimensional structural profiles

(2008) Katrin Wolff et al.   GENE

Protein structure prediction using basin-hopping

(2008) Michael C. Prentiss et al.   JOURNAL OF CHEMICAL PHYSICS

Guiding conformation space search with an all-atom energy potential

(2008) TJ Brunette et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Effective connectivity profile: A structural representation that evidences the relationship between protein structures and sequences

(2008) Ugo Bastolla et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Coarse-grained models of protein folding: toy models or predictive tools?

(2007) Cecilia Clementi   CURRENT OPINION IN STRUCTURAL BIOLOGY