Phylogeny and phylogeography of functional genes shared among seven terrestrial subsurface metagenomes reveal N-cycling and microbial evolutionary relationships
出版年份 2014 全文链接
标题
Phylogeny and phylogeography of functional genes shared among seven terrestrial subsurface metagenomes reveal N-cycling and microbial evolutionary relationships
作者
关键词
-
出版物
Frontiers in Microbiology
Volume 5, Issue -, Pages -
出版商
Frontiers Media SA
发表日期
2014-11-01
DOI
10.3389/fmicb.2014.00531
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Spatial analysis of hydrogen and oxygen stable isotopes (“isoscapes”) in ground water and tap water across South Africa
- (2014) A.G. West et al. JOURNAL OF GEOCHEMICAL EXPLORATION
- Correction for Seo et al., Combined TRPC3 and TRPC6 blockade by selective small-molecule or genetic deletion inhibits pathological cardiac hypertrophy
- (2014) PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- PERMANOVA, ANOSIM, and the Mantel test in the face of heterogeneous dispersions: What null hypothesis are you testing?
- (2013) Marti J. Anderson et al. ECOLOGICAL MONOGRAPHS
- Halomonas sulfidaeris-dominated microbial community inhabits a 1.8 km-deep subsurface Cambrian Sandstone reservoir
- (2013) Yiran Dong et al. ENVIRONMENTAL MICROBIOLOGY
- Dissecting the deep biosphere: retrieving authentic microbial communities from packer-isolated deep crystalline bedrock fracture zones
- (2013) Lotta Purkamo et al. FEMS MICROBIOLOGY ECOLOGY
- Does aspartic acid racemization constrain the depth limit of the subsurface biosphere?
- (2013) T. C. Onstott et al. Geobiology
- Taxonomically and functionally diverse microbial communities in deep crystalline rocks of the Fennoscandian shield
- (2013) Mari Nyyssönen et al. ISME Journal
- Gene expression in the deep biosphere
- (2013) William D. Orsi et al. NATURE
- ABIOTIC METHANE ON EARTH
- (2013) Giuseppe Etiope et al. REVIEWS OF GEOPHYSICS
- Evidence for Microbial Carbon and Sulfur Cycling in Deeply Buried Ridge Flank Basalt
- (2013) M. A. Lever et al. SCIENCE
- Phylogenetic and Functional Analysis of Metagenome Sequence from High-Temperature Archaeal Habitats Demonstrate Linkages between Metabolic Potential and Geochemistry
- (2013) William P. Inskeep et al. Frontiers in Microbiology
- CD-HIT: accelerated for clustering the next-generation sequencing data
- (2012) Limin Fu et al. BIOINFORMATICS
- An atom counter for measuring 81Kr and 85Kr in environmental samples
- (2012) W. Jiang et al. GEOCHIMICA ET COSMOCHIMICA ACTA
- Functional Biogeography of Ocean Microbes Revealed through Non-Negative Matrix Factorization
- (2012) Xingpeng Jiang et al. PLoS One
- MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space
- (2012) Fredrik Ronquist et al. SYSTEMATIC BIOLOGY
- Metagenomic Evidence for H2 Oxidation and H2 Production by Serpentinite-Hosted Subsurface Microbial Communities
- (2012) William J. Brazelton et al. Frontiers in Microbiology
- Meta-IDBA: a de Novo assembler for metagenomic data
- (2011) Y. Peng et al. BIOINFORMATICS
- ProtTest 3: fast selection of best-fit models of protein evolution
- (2011) Diego Darriba et al. BIOINFORMATICS
- The origin of NO3− and N2 in deep subsurface fracture water of South Africa
- (2011) Bianca J. Silver et al. CHEMICAL GEOLOGY
- Characterization of bacterial diversity to a depth of 1500 m in the Outokumpu deep borehole, Fennoscandian Shield
- (2011) Merja Itävaara et al. FEMS MICROBIOLOGY ECOLOGY
- Capture of Planktonic Microbial Diversity in Fractures by Long-Term Monitoring of Flowing Boreholes, Evander Basin, South Africa
- (2011) Mark M. Davidson et al. GEOMICROBIOLOGY JOURNAL
- Nitrogen cycling in a deep ocean margin sediment (Sagami Bay, Japan)
- (2011) Ronnie N. Glud et al. LIMNOLOGY AND OCEANOGRAPHY
- Microbial Ecology of the Dark Ocean above, at, and below the Seafloor
- (2011) B. N. Orcutt et al. MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS
- Toward molecular trait-based ecology through integration of biogeochemical, geographical and metagenomic data
- (2011) J. Raes et al. Molecular Systems Biology
- Nematoda from the terrestrial deep subsurface of South Africa
- (2011) G. Borgonie et al. NATURE
- The Pfam protein families database
- (2011) M. Punta et al. NUCLEIC ACIDS RESEARCH
- Global Phylogeography of Chitinase Genes in Aquatic Metagenomes
- (2010) Sara Beier et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Prodigal: prokaryotic gene recognition and translation initiation site identification
- (2010) Doug Hyatt et al. BMC BIOINFORMATICS
- High-frequency phage-mediated gene transfer in freshwater environments determined at single-cell level
- (2010) Takehiko Kenzaka et al. ISME Journal
- De novo assembly and analysis of RNA-seq data
- (2010) Gordon Robertson et al. NATURE METHODS
- Phylogeography of microbial phototrophs in the dry valleys of the high Himalayas and Antarctica
- (2010) S. K. Schmidt et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Pyrosequencing-Based Assessment of Soil pH as a Predictor of Soil Bacterial Community Structure at the Continental Scale
- (2009) C. L. Lauber et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Jalview Version 2--a multiple sequence alignment editor and analysis workbench
- (2009) A. M. Waterhouse et al. BIOINFORMATICS
- BLAST+: architecture and applications
- (2009) Christiam Camacho et al. BMC BIOINFORMATICS
- ABySS: A parallel assembler for short read sequence data
- (2009) J. T. Simpson et al. GENOME RESEARCH
- Prokaryotic Populations and Activities in an Interbedded Coal Deposit, Including a Previously Deeply Buried Section (1.6–2.3 km) Above ∼ 150 Ma Basement Rock
- (2009) John C. Fry et al. GEOMICROBIOLOGY JOURNAL
- Evaluation of the phylogenetic position of the sulfate-reducing bacterium Thermodesulfovibrio yellowstonii (phylum Nitrospirae) by means of gene order data from completely sequenced genomes
- (2009) T. Kunisawa INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Biogeography of soil archaea and bacteria along a steep precipitation gradient
- (2009) Roey Angel et al. ISME Journal
- Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data
- (2009) Micah Hamady et al. ISME Journal
- Improved RNA preservation for immunolabeling and laser microdissection
- (2009) A. L. Brown et al. RNA
- The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes
- (2008) F Meyer et al. BMC BIOINFORMATICS
- Bacterial community composition in thermophilic microbial mats from five hot springs in central Tibet
- (2008) Maggie C. Y. Lau et al. EXTREMOPHILES
- Evaluating different approaches that test whether microbial communities have the same structure
- (2008) Patrick D Schloss ISME Journal
- Environmental Genomics Reveals a Single-Species Ecosystem Deep Within Earth
- (2008) D. Chivian et al. SCIENCE
- Microbial Biogeography: From Taxonomy to Traits
- (2008) J. L. Green et al. SCIENCE
- A Probabilistic Model of Local Sequence Alignment That Simplifies Statistical Significance Estimation
- (2008) Sean R. Eddy PLoS Computational Biology
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreAdd your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload Now