标题
Influence of the genomic sequence on the primary structure of chromatin
作者
关键词
-
出版物
Frontiers in Life Science
Volume 5, Issue 1-2, Pages 29-68
出版商
Informa UK Limited
发表日期
2012-08-28
DOI
10.1080/21553769.2012.708882
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Prediction of Nucleosome Positioning in Genomes: Limits and Perspectives of Physical and Bioinformatic Approaches
- (2012) Pasquale De Santis et al. JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS
- Micrococcal Nuclease Does Not Substantially Bias Nucleosome Mapping
- (2012) James Allan et al. JOURNAL OF MOLECULAR BIOLOGY
- Nucleosome positioning and nucleosome stacking: two faces of the same coin
- (2012) Julien Riposo et al. Molecular BioSystems
- High-Resolution Genome-wide Mapping of the Primary Structure of Chromatin
- (2011) Zhenhai Zhang et al. CELL
- Revisiting polymer statistical physics to account for the presence of long-range-correlated structural disorder in 2D DNA chains
- (2011) J. Moukhtar et al. EUROPEAN PHYSICAL JOURNAL E
- Evolutionary divergence of intrinsic and trans-regulated nucleosome positioning sequences reveals plastic rules for chromatin organization
- (2011) A. Tsankov et al. GENOME RESEARCH
- Remodelers Organize Cellular Chromatin by Counteracting Intrinsic Histone-DNA Sequence Preferences in a Class-Specific Manner
- (2011) Y. M. Moshkin et al. MOLECULAR AND CELLULAR BIOLOGY
- Determinants of nucleosome organization in primary human cells
- (2011) Anton Valouev et al. NATURE
- An effect of DNA sequence on nucleosome occupancy and removal
- (2011) Xin Wang et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Statistical mechanics of nucleosome ordering by chromatin-structure-induced two-body interactions
- (2011) Răzvan V. Chereji et al. PHYSICAL REVIEW E
- A Role for Snf2-Related Nucleosome-Spacing Enzymes in Genome-Wide Nucleosome Organization
- (2011) T. Gkikopoulos et al. SCIENCE
- A Packing Mechanism for Nucleosome Organization Reconstituted Across a Eukaryotic Genome
- (2011) Z. Zhang et al. SCIENCE
- Nucleosomes and the accessibility problem
- (2011) Xin Wang et al. TRENDS IN GENETICS
- A RSC/Nucleosome Complex Determines Chromatin Architecture and Facilitates Activator Binding
- (2010) Monique Floer et al. CELL
- CTCF shapes chromatin by multiple mechanisms: the impact of 20 years of CTCF research on understanding the workings of chromatin
- (2010) Rolf Ohlsson et al. CHROMOSOMA
- Combinatorial, site-specific requirement for heterochromatic silencing factors in the elimination of nucleosome-free regions
- (2010) J. F. Garcia et al. GENES & DEVELOPMENT
- Effect of Genomic Long-Range Correlations on DNA Persistence Length: From Theory to Single Molecule Experiments
- (2010) Julien Moukhtar et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Schizosaccharomyces pombe genome-wide nucleosome mapping reveals positioning mechanisms distinct from those of Saccharomyces cerevisiae
- (2010) Alexandra B Lantermann et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Multi-scale coding of genomic information: From DNA sequence to genome structure and function
- (2010) Alain Arneodo et al. PHYSICS REPORTS-REVIEW SECTION OF PHYSICS LETTERS
- Nucleosome depletion at yeast terminators is not intrinsic and can occur by a transcriptional mechanism linked to 3'-end formation
- (2010) X. Fan et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The Role of Nucleosome Positioning in the Evolution of Gene Regulation
- (2010) Alexander M. Tsankov et al. PLOS BIOLOGY
- The Biology of Chromatin Remodeling Complexes
- (2009) Cedric R. Clapier et al. Annual Review of Biochemistry
- Dynamics of Nucleosomes Revealed by Time-Lapse Atomic Force Microscopy
- (2009) Luda S. Shlyakhtenko et al. BIOCHEMISTRY
- Nucleosome Shape Dictates Chromatin Fiber Structure
- (2009) Martin Depken et al. BIOPHYSICAL JOURNAL
- G+C content dominates intrinsic nucleosome occupancy
- (2009) Desiree Tillo et al. BMC BIOINFORMATICS
- Mechanisms that Specify Promoter Nucleosome Location and Identity
- (2009) Paul D. Hartley et al. CELL
- Poly(dA:dT) tracts: major determinants of nucleosome organization
- (2009) Eran Segal et al. CURRENT OPINION IN STRUCTURAL BIOLOGY
- Nucleosome positioning: How is it established, and why does it matter?
- (2009) Marta Radman-Livaja et al. DEVELOPMENTAL BIOLOGY
- Generalized wormlike chain model for long-range correlated heteropolymers
- (2009) J. Moukhtar et al. EPL
- Incorporating nucleosomes into thermodynamic models of transcription regulation
- (2009) T. Raveh-Sadka et al. GENOME RESEARCH
- Unusual composition of a yeast chromosome arm is associated with its delayed replication
- (2009) C. Payen et al. GENOME RESEARCH
- A novel strategy of transcription regulation by intragenic nucleosome ordering
- (2009) C. Vaillant et al. GENOME RESEARCH
- High-resolution nucleosome mapping reveals transcription-dependent promoter packaging
- (2009) A. Weiner et al. GENOME RESEARCH
- From DNA sequence to transcriptional behaviour: a quantitative approach
- (2009) Eran Segal et al. NATURE REVIEWS GENETICS
- High-resolution dynamic mapping of histone-DNA interactions in a nucleosome
- (2009) Michael A Hall et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Intrinsic histone-DNA interactions are not the major determinant of nucleosome positions in vivo
- (2009) Yong Zhang et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Using DNA mechanics to predict in vitro nucleosome positions and formation energies
- (2009) Alexandre V. Morozov et al. NUCLEIC ACIDS RESEARCH
- Predicting nucleosome positions on the DNA: combining intrinsic sequence preferences and remodeler activities
- (2009) Vladimir B. Teif et al. NUCLEIC ACIDS RESEARCH
- Thermodynamics of Intragenic Nucleosome Ordering
- (2009) G. Chevereau et al. PHYSICAL REVIEW LETTERS
- Nucleosome positioning by genomic excluding-energy barriers
- (2009) Pascale Milani et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- What controls nucleosome positions?
- (2009) Eran Segal et al. TRENDS IN GENETICS
- Nucleosome Geometry and Internucleosomal Interactions Control the Chromatin Fiber Conformation
- (2008) Nick Kepper et al. BIOPHYSICAL JOURNAL
- Dynamic Regulation of Nucleosome Positioning in the Human Genome
- (2008) Dustin E. Schones et al. CELL
- Nucleosome Retention and the Stochastic Nature of Promoter Chromatin Remodeling for Transcription
- (2008) Hinrich Boeger et al. CELL
- Entropy and Ordering of Hard Rods in One Dimension
- (2008) Paolo Giaquinta Entropy
- A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning
- (2008) A. Valouev et al. GENOME RESEARCH
- Two strategies for gene regulation by promoter nucleosomes
- (2008) I. Tirosh et al. GENOME RESEARCH
- A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome
- (2008) T. N. Mavrich et al. GENOME RESEARCH
- Mappingin VivoChromatin Interactions in Yeast Suggests an Extended Chromatin Fiber with Regional Variation in Compaction
- (2008) Job Dekker JOURNAL OF BIOLOGICAL CHEMISTRY
- Comparative Genomics and Molecular Dynamics of DNA Repeats in Eukaryotes
- (2008) G.-F. Richard et al. MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS
- Chromatin decouples promoter threshold from dynamic range
- (2008) Felix H. Lam et al. NATURE
- Nucleosome organization in the Drosophila genome
- (2008) Travis N. Mavrich et al. NATURE
- The DNA-encoded nucleosome organization of a eukaryotic genome
- (2008) Noam Kaplan et al. NATURE
- DNA physical properties determine nucleosome occupancy from yeast to fly
- (2008) Vincent Miele et al. NUCLEIC ACIDS RESEARCH
- Genomic Sequence Is Highly Predictive of Local Nucleosome Depletion
- (2008) Guo-Cheng Yuan et al. PLoS Computational Biology
- Dynamic Remodeling of Individual Nucleosomes Across a Eukaryotic Genome in Response to Transcriptional Perturbation
- (2008) Sushma Shivaswamy et al. PLOS BIOLOGY
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