Cytoplasmic genetic variation and extensive cytonuclear interactions influence natural variation in the metabolome

Hierarchical Nuclear and Cytoplasmic Genetic Architectures for Plant Growth and Defense within Arabidopsis

(2013) B. Joseph et al.   PLANT CELL

Retrograde Signaling by the Plastidial Metabolite MEcPP Regulates Expression of Nuclear Stress-Response Genes

(2012) Yanmei Xiao et al.   CELL

Quantifying the Elevation of Mitochondrial DNA Evolutionary Substitution Rates Over Nuclear Rates in the Intertidal Copepod Tigriopus californicus

(2012) Christopher S. Willett   JOURNAL OF MOLECULAR EVOLUTION

Cytonuclear epistatic quantitative trait locus mapping for plant height and ear height in maize

(2012) Zaixiang Tang et al.   MOLECULAR BREEDING

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Human mitochondrial DNA: roles of inherited and somatic mutations

(2012) Eric A. Schon et al.   NATURE REVIEWS GENETICS

Whole-genome sequencing of multiple Arabidopsis thaliana populations

(2011) Jun Cao et al.   NATURE GENETICS

Mitochondria: The Next (Neurode)Generation

(2011) Eric A. Schon et al.   NEURON

Evidence for a SAL1-PAP Chloroplast Retrograde Pathway That Functions in Drought and High Light Signaling inArabidopsis

(2011) Gonzalo M. Estavillo et al.   PLANT CELL

Recommendations for Reporting Metabolite Data

(2011) A. R. Fernie et al.   PLANT CELL

A Topological Map of the Compartmentalized Arabidopsis thaliana Leaf Metabolome

(2011) Stephan Krueger et al.   PLoS One

Combining Genome-Wide Association Mapping and Transcriptional Networks to Identify Novel Genes Controlling Glucosinolates in Arabidopsis thaliana

(2011) Eva K. F. Chan et al.   PLOS BIOLOGY

Cytonuclear Interactions and the Economics of Mating in Seed Beetles

(2010) Damian K. Dowling et al.   AMERICAN NATURALIST

Cytoscape 2.8: new features for data integration and network visualization

(2010) M. E. Smoot et al.   BIOINFORMATICS

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

A map of human genome variation from population-scale sequencing

(2010) Richard M. Durbin et al.   NATURE

Exploring genetic and expression differences between physiologically extreme ecotypes: comparative genomic hybridization and gene expression studies of Kas-1 and Tsu-1 accessions of Arabidopsis thaliana

(2010) THOMAS E. JUENGER et al.   PLANT CELL AND ENVIRONMENT

Cytoplasmic phylogeny and evidence of cyto-nuclear co-adaptation in Arabidopsis thaliana

(2010) Michaël Moison et al.   PLANT JOURNAL

The Complex Genetic Architecture of the Metabolome

(2010) Eva K. F. Chan et al.   PLoS Genetics

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

CYTONUCLEAR INTERACTIONS CAN FAVOR THE EVOLUTION OF GENOMIC IMPRINTING

(2009) Jason B. Wolf   EVOLUTION

Polymorphisms in Multiple Genes Contribute to the Spontaneous Mitochondrial Genome Instability of Saccharomyces cerevisiae S288C Strains

(2009) L. N. Dimitrov et al.   GENETICS

Population genomics of domestic and wild yeasts

(2009) Gianni Liti et al.   NATURE

Large-Scale Reverse Genetics in Arabidopsis: Case Studies from the Chloroplast 2010 Project

(2009) I. Ajjawi et al.   PLANT PHYSIOLOGY

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

GENETICS OF DROUGHT ADAPTATION INARABIDOPSIS THALIANAII. QTL ANALYSIS OF A NEW MAPPING POPULATION, KAS-1 × TSU-1

(2008) John K. McKay et al.   EVOLUTION

Complex Genetics Control Natural Variation in Arabidopsis thaliana Resistance to Botrytis cinerea

(2008) H. C. Rowe et al.   GENETICS

Power and SNP tagging in whole mitochondrial genome association studies

(2008) A. F. McRae et al.   GENOME RESEARCH

Biochemical Networks and Epistasis Shape the Arabidopsis thaliana Metabolome

(2008) H. C. Rowe et al.   PLANT CELL

Quality control for plant metabolomics: reporting MSI-compliant studies

(2008) Oliver Fiehn et al.   PLANT JOURNAL