Expression Profiling during Arabidopsis/Downy Mildew Interaction Reveals a Highly-Expressed Effector That Attenuates Responses to Salicylic Acid

EXPRSS: an Illumina based high-throughput expression-profiling method to reveal transcriptional dynamics

(2014) Ghanasyam Rallapalli et al.   BMC GENOMICS

Novel core promoter elements in the oomycete pathogen Phytophthora infestans and their influence on expression detected by genome-wide analysis

(2013) Sourav Roy et al.   BMC GENOMICS

In Planta Effector Competition Assays DetectHyaloperonospora arabidopsidisEffectors That Contribute to Virulence and Localize to Different Plant Subcellular Compartments

(2013) Jorge Luis Badel et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Auxin promotes susceptibility toPseudomonas syringaevia a mechanism independent of suppression of salicylic acid-mediated defenses

(2013) Andrew M. Mutka et al.   PLANT JOURNAL

Export of Salicylic Acid from the Chloroplast Requires the Multidrug and Toxin Extrusion-Like Transporter EDS5

(2013) M. Serrano et al.   PLANT PHYSIOLOGY

Transgenerational gene silencing causes gain of virulence in a plant pathogen

(2013) Dinah Qutob et al.   Nature Communications

A Downy Mildew Effector Attenuates Salicylic Acid–Triggered Immunity in Arabidopsis by Interacting with the Host Mediator Complex

(2013) Marie-Cécile Caillaud et al.   PLOS BIOLOGY

Bacterial Effector Activates Jasmonate Signaling by Directly Targeting JAZ Transcriptional Repressors

(2013) Shushu Jiang et al.   PLoS Pathogens

Nuclear jasmonate and salicylate signaling and crosstalk in defense against pathogens

(2013) Selena Gimenez-Ibanez et al.   Frontiers in Plant Science

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

(2012) H. Thorvaldsdottir et al.   BRIEFINGS IN BIOINFORMATICS

Coronatine Promotes Pseudomonas syringae Virulence in Plants by Activating a Signaling Cascade that Inhibits Salicylic Acid Accumulation

(2012) Xiao-yu Zheng et al.   Cell Host & Microbe

Dual RNA-seq of pathogen and host

(2012) Alexander J. Westermann et al.   NATURE REVIEWS MICROBIOLOGY

Bioinformatic Inference of Specific and General Transcription Factor Binding Sites in the Plant Pathogen Phytophthora infestans

(2012) Michael F Seidl et al.   PLoS One

Computational Prediction and Molecular Characterization of an Oomycete Effector and the Cognate Arabidopsis Resistance Gene

(2012) Sandra Goritschnig et al.   PLoS Genetics

Genome Analyses of an Aggressive and Invasive Lineage of the Irish Potato Famine Pathogen

(2012) David E. L. Cooke et al.   PLoS Pathogens

Understanding and Exploiting Late Blight Resistance in the Age of Effectors

(2011) Vivianne G.A.A. Vleeshouwers et al.   Annual Review of Phytopathology

Hormone Crosstalk in Plant Disease and Defense: More Than Just JASMONATE-SALICYLATE Antagonism

(2011) Alexandre Robert-Seilaniantz et al.   Annual Review of Phytopathology

FIMO: scanning for occurrences of a given motif

(2011) Charles E. Grant et al.   BIOINFORMATICS

Activation of plant pattern-recognition receptors by bacteria

(2011) Cécile Segonzac et al.   CURRENT OPINION IN MICROBIOLOGY

Molecular Cloning of ATR5Emoy2 from Hyaloperonospora arabidopsidis, an Avirulence Determinant That Triggers RPP5-Mediated Defense in Arabidopsis

(2011) Kate Bailey et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Timing of plant immune responses by a central circadian regulator

(2011) Wei Wang et al.   NATURE

Botrytis cinereaManipulates the Antagonistic Effects between Immune Pathways to Promote Disease Development in Tomato

(2011) Mohamed El Oirdi et al.   PLANT CELL

Subcellular localization of the Hpa RxLR effector repertoire identifies a tonoplast-associated protein HaRxL17 that confers enhanced plant susceptibility

(2011) Marie-Cécile Caillaud et al.   PLANT JOURNAL

The microRNA miR393 re-directs secondary metabolite biosynthesis away from camalexin and towards glucosinolates

(2011) Alexandre Robert-Seilaniantz et al.   PLANT JOURNAL

Identification of Hyaloperonospora arabidopsidis Transcript Sequences Expressed during Infection Reveals Isolate-Specific Effectors

(2011) Adriana Cabral et al.   PLoS One

Independently Evolved Virulence Effectors Converge onto Hubs in a Plant Immune System Network

(2011) M. S. Mukhtar et al.   SCIENCE

Jasmonate-induced defenses: a tale of intelligence, collaborators and rascals

(2011) Carlos L. Ballaré   TRENDS IN PLANT SCIENCE

Multiple Candidate Effectors from the Oomycete Pathogen Hyaloperonospora arabidopsidis Suppress Host Plant Immunity

(2011) Georgina Fabro et al.   PLoS Pathogens

Hyaloperonospora arabidopsidisas a Pathogen Model

(2010) Mary E. Coates et al.   Annual Review of Phytopathology

Stampy: A statistical algorithm for sensitive and fast mapping of Illumina sequence reads

(2010) G. Lunter et al.   GENOME RESEARCH

Direct transcriptional control of the Arabidopsis immune receptor FLS2 by the ethylene-dependent transcription factors EIN3 and EIL1

(2010) F. Boutrot et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Signatures of Adaptation to Obligate Biotrophy in the Hyaloperonospora arabidopsidis Genome

(2010) L. Baxter et al.   SCIENCE

Genome Expansion and Gene Loss in Powdery Mildew Fungi Reveal Tradeoffs in Extreme Parasitism

(2010) P. D. Spanu et al.   SCIENCE

Balanced Nuclear and Cytoplasmic Activities of EDS1 Are Required for a Complete Plant Innate Immune Response

(2010) Ana V. García et al.   PLoS Pathogens

Salicylic Acid, a Multifaceted Hormone to Combat Disease

(2009) A. Corina Vlot et al.   Annual Review of Phytopathology

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

The zig-zag-zig in oomycete-plant interactions

(2009) INGO HEIN et al.   MOLECULAR PLANT PATHOLOGY

Nitric Oxide as a Partner of Reactive Oxygen Species Participates in Disease Resistance to Necrotrophic Pathogen Botrytis cinerea in Nicotiana benthamiana

(2009) Shuta Asai et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Disease-Specific Expression of Host Genes During Downy Mildew Infection ofArabidopsis

(2009) Robin P. Huibers et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

(+)-7-iso-Jasmonoyl-L-isoleucine is the endogenous bioactive jasmonate

(2009) Sandra Fonseca et al.   Nature Chemical Biology

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH

ETHYLENE INSENSITIVE3 and ETHYLENE INSENSITIVE3-LIKE1 Repress SALICYLIC ACID INDUCTION DEFICIENT2 Expression to Negatively Regulate Plant Innate Immunity in Arabidopsis

(2009) H. Chen et al.   PLANT CELL

Antagonism between salicylic and abscisic acid reflects early host-pathogen conflict and moulds plant defence responses

(2009) Marta de Torres Zabala et al.   PLANT JOURNAL

Different Lepidopteran Elicitors Account for Cross-Talk in Herbivory-Induced Phytohormone Signaling

(2009) C. Diezel et al.   PLANT PHYSIOLOGY

Abscisic Acid Has a Key Role in Modulating Diverse Plant-Pathogen Interactions

(2009) J. Fan et al.   PLANT PHYSIOLOGY

Copy Number Variation and Transcriptional Polymorphisms of Phytophthora sojae RXLR Effector Genes Avr1a and Avr3a

(2009) Dinah Qutob et al.   PLoS One

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

MAPK Signaling Regulates Nitric Oxide and NADPH Oxidase-Dependent Oxidative Bursts in Nicotiana benthamiana

(2008) S. Asai et al.   PLANT CELL