The Contribution of Viral Genotype to Plasma Viral Set-Point in HIV Infection

MCMC Methods for Multi-Response Generalized Linear Mixed Models: TheMCMCglmmRPackage

(2015) Jarrod D. Hadfield   Journal of Statistical Software

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

Fast likelihood calculations for comparative analyses

(2012) Robert P. Freckleton   Methods in Ecology and Evolution

Is the virulence of HIV changing? A meta-analysis of trends in prognostic markers of HIV disease progression and transmission

(2011) Joshua T. Herbeck et al.   AIDS

Transmission Network Parameters Estimated From HIV Sequences for a Nationwide Epidemic

(2011) Andrew J. Leigh Brown et al.   JOURNAL OF INFECTIOUS DISEASES

A systems analysis of mutational effects in HIV-1 protease and reverse transcriptase

(2011) Trevor Hinkley et al.   NATURE GENETICS

A Strong Case for Viral Genetic Factors in HIV Virulence

(2011) Viktor Müller et al.   Viruses-Basel

HIV RNA levels in transmission sources only weakly predict plasma viral load in recipients

(2010) Antoinette C van der Kuyl et al.   AIDS

HIV RNA level in early infection is predicted by viral load in the transmission source

(2010) Frederick M Hecht et al.   AIDS

General quantitative genetic methods for comparative biology: phylogenies, taxonomies and multi-trait models for continuous and categorical characters

(2010) J. D. HADFIELD et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Evolution of the HIV-1 nef gene in HLA-B*57 Positive Elite Suppressors

(2010) Maria Salgado et al.   Retrovirology

HIV-1 Transmitting Couples Have Similar Viral Load Set-Points in Rakai, Uganda

(2010) T. Déirdre Hollingsworth et al.   PLoS Pathogens

Phylogenetic Approach Reveals That Virus Genotype Largely Determines HIV Set-Point Viral Load

(2010) Samuel Alizon et al.   PLoS Pathogens

African descent is associated with slower CD4 cell count decline in treatment-naive patients of the Swiss HIV Cohort Study

(2009) Viktor Müller et al.   AIDS

Is HIV Becoming More Virulent? Initial CD4 Cell Counts among HIV Seroconverters during the Course of the HIV Epidemic: 1985–2007

(2009) Nancy Crum‐Cianflone et al.   CLINICAL INFECTIOUS DISEASES

Common Genetic Variation and the Control of HIV-1 in Humans

(2009) Jacques Fellay et al.   PLoS Genetics

Increasing Clinical Virulence in Two Decades of the Italian HIV Epidemic

(2009) Viktor Müller et al.   PLoS Pathogens

Effect of Human Immunodeficiency Virus Type 1 (HIV‐1) Subtype on Disease Progression in Persons from Rakai, Uganda, with Incident HIV‐1 Infection

(2008) Noah Kiwanuka et al.   JOURNAL OF INFECTIOUS DISEASES

Direct evidence of extensive diversity of HIV-1 in Kinshasa by 1960

(2008) Michael Worobey et al.   NATURE

HIV-1 reverse transcriptase inhibitor resistance mutations and fitness: A view from the clinic and ex vivo

(2008) Javier Martinez-Picado et al.   VIRUS RESEARCH