Components of Selection in the Evolution of the Influenza Virus: Linkage Effects Beat Inherent Selection

Canalization of the evolutionary trajectory of the human influenza virus

(2012) Trevor Bedford et al.   BMC BIOLOGY

Clonal Interference in the Evolution of Influenza

(2012) N. Strelkowa et al.   GENETICS

Distribution of fixed beneficial mutations and the rate of adaptation in asexual populations

(2012) B. H. Good et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Emergent Neutrality in Adaptive Asexual Evolution

(2011) Stephan Schiffels et al.   GENETICS

Distinguishing Driver and Passenger Mutations in an Evolutionary History Categorized by Interference

(2011) Christopher J. R. Illingworth et al.   GENETICS

Genetic Variation and the Fate of Beneficial Mutations in Asexual Populations

(2011) Gregory I. Lang et al.   GENETICS

The Genomic Rate of Molecular Adaptation of the Human Influenza A Virus

(2011) Samir Bhatt et al.   MOLECULAR BIOLOGY AND EVOLUTION

Identification of potential conserved RNA secondary structure throughout influenza A coding regions

(2011) W. N. Moss et al.   RNA

Prevalence of Epistasis in the Evolution of Influenza A Surface Proteins

(2011) Sergey Kryazhimskiy et al.   PLoS Genetics

High Level of Genetic Compatibility between Swine-Origin H1N1 and Highly Pathogenic Avian H5N1 Influenza Viruses

(2010) Cássio Pontes Octaviani et al.   JOURNAL OF VIROLOGY

Charting the Host Adaptation of Influenza Viruses

(2010) M. dos Reis et al.   MOLECULAR BIOLOGY AND EVOLUTION

Allele dynamics plots for the study of evolutionary dynamics in viral populations

(2010) Lars Steinbrück et al.   NUCLEIC ACIDS RESEARCH

Guidelines for Identifying Homologous Recombination Events in Influenza A Virus

(2010) Maciej F. Boni et al.   PLoS One

Fitness flux and ubiquity of adaptive evolution

(2010) V. Mustonen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Permissive Secondary Mutations Enable the Evolution of Influenza Oseltamivir Resistance

(2010) J. D. Bloom et al.   SCIENCE

Glycosylation Focuses Sequence Variation in the Influenza A Virus H1 Hemagglutinin Globular Domain

(2010) Suman R. Das et al.   PLoS Pathogens

Quantifying the Impact of Immune Escape on Transmission Dynamics of Influenza

(2009) A. W. Park et al.   SCIENCE

Identifying Changes in Selective Constraints: Host Shifts in Influenza

(2009) Asif U. Tamuri et al.   PLoS Computational Biology

Natural Selection for Nucleotide Usage at Synonymous and Nonsynonymous Sites in Influenza A Virus Genes

(2008) S. Kryazhimskiy et al.   JOURNAL OF VIROLOGY

Homologous Recombination Is Very Rare or Absent in Human Influenza A Virus

(2008) M. F. Boni et al.   JOURNAL OF VIROLOGY

A Maximum Likelihood Method for Detecting Directional Evolution in Protein Sequences and Its Application to Influenza A Virus

(2008) S. L. Kosakovsky Pond et al.   MOLECULAR BIOLOGY AND EVOLUTION

Structure and mechanism of the M2 proton channel of influenza A virus

(2008) Jason R. Schnell et al.   NATURE

The genomic and epidemiological dynamics of human influenza A virus

(2008) Andrew Rambaut et al.   NATURE

Directionality in the evolution of influenza A haemagglutinin

(2008) S. Kryazhimskiy et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The Population Genetics of dN/dS

(2008) Sergey Kryazhimskiy et al.   PLoS Genetics