Genomic Insights into the Origin of Parasitism in the Emerging Plant Pathogen Bursaphelenchus xylophilus

The draft genome of the parasitic nematode Trichinella spiralis

(2011) Makedonka Mitreva et al.   NATURE GENETICS

The evolution of spliced leadertrans-splicing in nematodes

(2010) Jonathan Pettitt et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

Iterative Correction of Reference Nucleotides (iCORN) using second generation sequencing technology

(2010) Thomas D. Otto et al.   BIOINFORMATICS

Cloning and characterization of a venom allergen-like protein gene cluster from the pinewood nematode Bursaphelenchus xylophilus

(2010) Shifeng Lin et al.   EXPERIMENTAL PARASITOLOGY

CAZymes Analysis Toolkit (CAT): Web service for searching and analyzing carbohydrate-active enzymes in a newly sequenced organism using CAZy database

(2010) Byung H Park et al.   GLYCOBIOLOGY

Multiple lateral gene transfers and duplications have promoted plant parasitism ability in nematodes

(2010) Etienne G. J. Danchin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Improving draft assemblies by iterative mapping and assembly of short reads to eliminate gaps

(2010) Isheng J Tsai et al.   GENOME BIOLOGY

Oxidative stress and longevity in Caenorhabditis elegans as mediated by SKN-1

(2009) Sang-Kyu Park et al.   AGING CELL

ABACAS: algorithm-based automatic contiguation of assembled sequences

(2009) S. Assefa et al.   BIOINFORMATICS

Variant Ionotropic Glutamate Receptors as Chemosensory Receptors in Drosophila

(2009) Richard Benton et al.   CELL

Identification and functional characterization of effectors in expressed sequence tags from various life cycle stages of the potato cyst nematodeGlobodera pallida

(2009) JOHN T. JONES et al.   MOLECULAR PLANT PATHOLOGY

A Secreted SPRY Domain-Containing Protein (SPRYSEC) from the Plant-Parasitic NematodeGlobodera rostochiensisInteracts with a CC-NB-LRR Protein from a Susceptible Tomato

(2009) Sajid Rehman et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Identification of putative expansin-like genes from the pine wood nematode, Bursaphelenchus xylophilus, and evolution of the expansin gene family within the Nematoda

(2009) Taisei Kikuchi et al.   NEMATOLOGY

A phylogenetic tree of nematodes based on about 1200 full-length small subunit ribosomal DNA sequences

(2009) Hanny van Megen et al.   NEMATOLOGY

The Pfam protein families database

(2009) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

How to become a parasite – lessons from the genomes of nematodes

(2009) Christoph Dieterich et al.   TRENDS IN GENETICS

Redundant and Specific Roles of the ARGONAUTE Proteins AGO1 and ZLL in Development and Small RNA-Directed Gene Silencing

(2009) Allison C. Mallory et al.   PLoS Genetics

LeARN: a platform for detecting, clustering and annotating non-coding RNAs

(2008) Céline Noirot et al.   BMC BIOINFORMATICS

The Caenorhabditis chemoreceptor gene families

(2008) James H Thomas et al.   BMC BIOLOGY

The origin and evolution of plant cystatins and their target cysteine proteinases indicate a complex functional relationship

(2008) Manuel Martinez et al.   BMC EVOLUTIONARY BIOLOGY

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Neuropeptide-like protein diversity in phylum Nematoda

(2008) Paul McVeigh et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

Bursaphelenchus xylophilus: opportunities in comparative genomics and molecular host–parasite interactions

(2008) JOHN T. JONES et al.   MOLECULAR PLANT PATHOLOGY

Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita

(2008) Pierre Abad et al.   NATURE BIOTECHNOLOGY

The Pristionchus pacificus genome provides a unique perspective on nematode lifestyle and parasitism

(2008) Christoph Dieterich et al.   NATURE GENETICS

Assessing the gene space in draft genomes

(2008) Genis Parra et al.   NUCLEIC ACIDS RESEARCH

High-throughput functional annotation and data mining with the Blast2GO suite

(2008) S. Gotz et al.   NUCLEIC ACIDS RESEARCH

Sequence and genetic map of Meloidogyne hapla: A compact nematode genome for plant parasitism

(2008) C. H. Opperman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

On the Extent and Origins of Genic Novelty in the Phylum Nematoda

(2008) James Wasmuth et al.   PLoS Neglected Tropical Diseases

Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments

(2008) Brian J Haas et al.   GENOME BIOLOGY

The MEROPS batch BLAST: A tool to detect peptidases and their non-peptidase homologues in a genome

(2007) Neil D. Rawlings et al.   BIOCHIMIE