Copy Number Variation Is a Fundamental Aspect of the Placental Genome

Replication timing influences DNA copy number determination by array-CGH

(2016) Georgi Manukjan et al.   BIOTECHNIQUES

Transcription-factor occupancy at HOT regions quantitatively predicts RNA polymerase recruitment in five human cell lines

(2013) Joseph W Foley et al.   BMC GENOMICS

Visualizing developmentally programmed endoreplication in mammals using ubiquitin oscillators

(2013) A. Sakaue-Sawano et al.   DEVELOPMENT

Discovery of recurrent structural variants in nasopharyngeal carcinoma

(2013) A. Valouev et al.   GENOME RESEARCH

Endogenous retroviruses function as species-specific enhancer elements in the placenta

(2013) Edward B Chuong et al.   NATURE GENETICS

Fundamental differences in endoreplication in mammals andDrosophilarevealed by analysis of endocycling and endomitotic cells

(2013) Noa Sher et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome Mosaicism--One Human, Multiple Genomes

(2013) J. R. Lupski   SCIENCE

Somatic Mutation, Genomic Variation, and Neurological Disease

(2013) A. Poduri et al.   SCIENCE

Systematic biases in DNA copy number originate from isolation procedures

(2013) Sebastiaan van Heesch et al.   GENOME BIOLOGY

Human Placental Expression of SLIT/ROBO Signaling Cues: Effects of Preeclampsia and Hypoxia1

(2012) Wu-Xiang Liao et al.   BIOLOGY OF REPRODUCTION

Somatic copy number mosaicism in human skin revealed by induced pluripotent stem cells

(2012) Alexej Abyzov et al.   NATURE

Extensive genetic variation in somatic human tissues

(2012) M. O'Huallachain et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Integrative analysis of gene amplification in Drosophila follicle cells: parameters of origin activation and repression

(2011) J. C. Kim et al.   GENES & DEVELOPMENT

CNVnator: An approach to discover, genotype, and characterize typical and atypical CNVs from family and population genome sequencing

(2011) A. Abyzov et al.   GENOME RESEARCH

Developmental control of gene copy number by repression of replication initiation and fork progression

(2011) N. Sher et al.   GENOME RESEARCH

Genome-scale analysis of replication timing: from bench to bioinformatics

(2011) Tyrone Ryba et al.   Nature Protocols

Cistrome: an integrative platform for transcriptional regulation studies

(2011) Tao Liu et al.   GENOME BIOLOGY

Developmental control of the DNA replication and transcription programs

(2010) J. Nordman et al.   GENOME RESEARCH

Cadherins in the human placenta – epithelial–mesenchymal transition (EMT) and placental development

(2010) M.I. Kokkinos et al.   PLACENTA

3′-End Sequencing for Expression Quantification (3SEQ) from Archival Tumor Samples

(2010) Andrew H. Beck et al.   PLoS One

Distinct histone modifications in stem cell lines and tissue lineages from the early mouse embryo

(2010) P. J. Rugg-Gunn et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Development and function of trophoblast giant cells in the rodent placenta

(2009) Dong Hu et al.   INTERNATIONAL JOURNAL OF DEVELOPMENTAL BIOLOGY

Model-based Analysis of ChIP-Seq (MACS)

(2008) Yong Zhang et al.   GENOME BIOLOGY