Extent, Causes, and Consequences of Small RNA Expression Variation in Human Adipose Tissue
出版年份 2012 全文链接
标题
Extent, Causes, and Consequences of Small RNA Expression Variation in Human Adipose Tissue
作者
关键词
MicroRNAs, Small nucleolar RNAs, RNA sequencing, Gene expression, Messenger RNA, Sequence alignment, Body mass index, Phenotypes
出版物
PLoS Genetics
Volume 8, Issue 5, Pages e1002704
出版商
Public Library of Science (PLoS)
发表日期
2012-05-11
DOI
10.1371/journal.pgen.1002704
参考文献
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注意：仅列出部分参考文献，下载原文获取全部文献信息。- Rapid Changes in MicroRNA-146a Expression Negatively Regulate the IL-1 -Induced Inflammatory Response in Human Lung Alveolar Epithelial Cells
- (2014) M. M. Perry et al. JOURNAL OF IMMUNOLOGY
- Mapping cis- and trans-regulatory effects across multiple tissues in twins
- (2012) Elin Grundberg et al. NATURE GENETICS
- Using probabilistic estimation of expression residuals (PEER) to obtain increased power and interpretability of gene expression analyses
- (2012) Oliver Stegle et al. Nature Protocols
- Deep-Sequencing Protocols Influence the Results Obtained in Small-RNA Sequencing
- (2012) Joern Toedling et al. PLoS One
- Unraveling the Regulatory Mechanisms Underlying Tissue-Dependent Genetic Variation of Gene Expression
- (2012) Jingyuan Fu et al. PLoS Genetics
- Identification of miRNomes in Human Liver and Hepatocellular Carcinoma Reveals miR-199a/b-3p as Therapeutic Target for Hepatocellular Carcinoma
- (2011) Jin Hou et al. CANCER CELL
- miR-30b/30d Regulation of GalNAc Transferases Enhances Invasion and Immunosuppression during Metastasis
- (2011) Avital Gaziel-Sovran et al. CANCER CELL
- MicroRNA evolution by arm switching
- (2011) Sam Griffiths-Jones et al. EMBO REPORTS
- Post-transcriptional generation of miRNA variants by multiple nucleotidyl transferases contributes to miRNA transcriptome complexity
- (2011) S. K. Wyman et al. GENOME RESEARCH
- Barcoding bias in high-throughput multiplex sequencing of miRNA
- (2011) S. Alon et al. GENOME RESEARCH
- Discovery of new microRNAs by small RNAome deep sequencing in childhood acute lymphoblastic leukemia
- (2011) D Schotte et al. LEUKEMIA
- miR-29a and miR-29b Contribute to Pancreatic -Cell-Specific Silencing of Monocarboxylate Transporter 1 (Mct1)
- (2011) T. J. Pullen et al. MOLECULAR AND CELLULAR BIOLOGY
- A synonymous variant in IRGM alters a binding site for miR-196 and causes deregulation of IRGM-dependent xenophagy in Crohn's disease
- (2011) Patrick Brest et al. NATURE GENETICS
- Identification of an imprinted master trans regulator at the KLF14 locus related to multiple metabolic phenotypes
- (2011) Kerrin S Small et al. NATURE GENETICS
- Low-bias, strand-specific transcriptome Illumina sequencing by on-flowcell reverse transcription (FRT-seq)
- (2011) Lira Mamanova et al. Nature Protocols
- Non-coding RNAs in human disease
- (2011) Manel Esteller NATURE REVIEWS GENETICS
- g:Profiler—a web server for functional interpretation of gene lists (2011 update)
- (2011) Jüri Reimand et al. NUCLEIC ACIDS RESEARCH
- PPARα Is Regulated by miR-21 and miR-27b in Human Liver
- (2011) Katsuhiko Kida et al. PHARMACEUTICAL RESEARCH
- The Impact of miRNA Target Sites in Coding Sequences and in 3′UTRs
- (2011) Zhuo Fang et al. PLoS One
- MicroRNA Expression in Abdominal and Gluteal Adipose Tissue Is Associated with mRNA Expression Levels and Partly Genetically Driven
- (2011) Mattias Rantalainen et al. PLoS One
- Quantitative Bias in Illumina TruSeq and a Novel Post Amplification Barcoding Strategy for Multiplexed DNA and Small RNA Deep Sequencing
- (2011) Filip Van Nieuwerburgh et al. PLoS One
- Animal snoRNAs and scaRNAs with exceptional structures
- (2011) Manja Marz et al. RNA Biology
- Improved annotation of C. elegans microRNAs by deep sequencing reveals structures associated with processing by Drosha and Dicer
- (2011) M. B. Warf et al. RNA
- Joint Genetic Analysis of Gene Expression Data with Inferred Cellular Phenotypes
- (2011) Leopold Parts et al. PLoS Genetics
- The Architecture of Gene Regulatory Variation across Multiple Human Tissues: The MuTHER Study
- (2011) Alexandra C. Nica et al. PLoS Genetics
- Trans-eQTLs Reveal That Independent Genetic Variants Associated with a Complex Phenotype Converge on Intermediate Genes, with a Major Role for the HLA
- (2011) Rudolf S. N. Fehrmann et al. PLoS Genetics
- miR-29 Is a Major Regulator of Genes Associated with Pulmonary Fibrosis
- (2010) Leah Cushing et al. AMERICAN JOURNAL OF RESPIRATORY CELL AND MOLECULAR BIOLOGY
- MapMi: automated mapping of microRNA loci
- (2010) Jose Afonso Guerra-Assuncao et al. BMC BIOINFORMATICS
- Global microRNA expression profiles in insulin target tissues in a spontaneous rat model of type 2 diabetes
- (2010) B. M. Herrera et al. DIABETOLOGIA
- Identification of cis- and trans-regulatory variation modulating microRNA expression levels in human fibroblasts
- (2010) C. Borel et al. GENOME RESEARCH
- Regulation of MicroRNA Expression and Abundance during Lymphopoiesis
- (2010) Stefan Kuchen et al. IMMUNITY
- miR-451enhances erythroid differentiation in K562 cells
- (2010) Hana Bruchova-Votavova et al. LEUKEMIA & LYMPHOMA
- Pathogenic LRRK2 negatively regulates microRNA-mediated translational repression
- (2010) Stephan Gehrke et al. NATURE
- Widespread transcription at neuronal activity-regulated enhancers
- (2010) Tae-Kyung Kim et al. NATURE
- Biological, clinical and population relevance of 95 loci for blood lipids
- (2010) Tanya M. Teslovich et al. NATURE
- A global map of human gene expression
- (2010) Margus Lukk et al. NATURE BIOTECHNOLOGY
- Small RNA sorting: matchmaking for Argonautes
- (2010) Benjamin Czech et al. NATURE REVIEWS GENETICS
- Ensembl 2011
- (2010) P. Flicek et al. NUCLEIC ACIDS RESEARCH
- ArrayExpress update--an archive of microarray and high-throughput sequencing-based functional genomics experiments
- (2010) H. Parkinson et al. NUCLEIC ACIDS RESEARCH
- Human box C/D snoRNAs with miRNA like functions: expanding the range of regulatory RNAs
- (2010) Markus Brameier et al. NUCLEIC ACIDS RESEARCH
- NCBI GEO: archive for functional genomics data sets--10 years on
- (2010) T. Barrett et al. NUCLEIC ACIDS RESEARCH
- miRBase: integrating microRNA annotation and deep-sequencing data
- (2010) A. Kozomara et al. NUCLEIC ACIDS RESEARCH
- The UCSC Genome Browser database: update 2011
- (2010) P. A. Fujita et al. NUCLEIC ACIDS RESEARCH
- miR-145-dependent targeting of Junctional Adhesion Molecule A and modulation of fascin expression are associated with reduced breast cancer cell motility and invasiveness
- (2010) M Götte et al. ONCOGENE
- Characterization of the Melanoma miRNAome by Deep Sequencing
- (2010) Mitchell S. Stark et al. PLoS One
- Expression of Adipose MicroRNAs Is Sensitive to Dietary Conjugated Linoleic Acid Treatment in Mice
- (2010) Pilar Parra et al. PLoS One
- Polymorphic Cis- and Trans-Regulation of Human Gene Expression
- (2010) Vivian G. Cheung et al. PLOS BIOLOGY
- A Bayesian Framework to Account for Complex Non-Genetic Factors in Gene Expression Levels Greatly Increases Power in eQTL Studies
- (2010) Oliver Stegle et al. PLoS Computational Biology
- Candidate Causal Regulatory Effects by Integration of Expression QTLs with Complex Trait Genetic Associations
- (2010) Alexandra C. Nica et al. PLoS Genetics
- Evidence for natural antisense transcript-mediated inhibition of microRNA function
- (2010) Mohammad Ali Faghihi et al. GENOME BIOLOGY
- Differential expression analysis for sequence count data
- (2010) Simon Anders et al. GENOME BIOLOGY
- ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data
- (2009) M. Morgan et al. BIOINFORMATICS
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- MicroRNAs: Target Recognition and Regulatory Functions
- (2009) David P. Bartel CELL
- Repertoire and evolution of miRNA genes in four divergent nematode species
- (2009) E. de Wit et al. GENOME RESEARCH
- miR-93, miR-98, and miR-197 Regulate Expression of Tumor Suppressor Gene FUS1
- (2009) L. Du et al. MOLECULAR CANCER RESEARCH
- Many roads to maturity: microRNA biogenesis pathways and their regulation
- (2009) Julia Winter et al. NATURE CELL BIOLOGY
- Biogenesis of small RNAs in animals
- (2009) V. Narry Kim et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- MicroRNA Expression in Human Omental and Subcutaneous Adipose Tissue
- (2009) Nora Klöting et al. PLoS One
- Small RNAs derived from snoRNAs
- (2009) R. J. Taft et al. RNA
- Genome-Wide Association Scan Meta-Analysis Identifies Three Loci Influencing Adiposity and Fat Distribution
- (2009) Cecilia M. Lindgren et al. PLoS Genetics
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
- Up-regulated expression of microRNA-143 in association with obesity in adipose tissue of mice fed high-fat diet
- (2008) Rieko Takanabe et al. BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
- Role ofmiRNA-146ain the regulation of the innate immune response and cancer
- (2008) Andrew E. Williams et al. BIOCHEMICAL SOCIETY TRANSACTIONS
- Quantitative Linkage Analysis for Pancreatic B-cell Function and Insulin Resistance in a Large Twin Cohort
- (2008) M. Falchi et al. DIABETES
- Chromatin structure analyses identify miRNA promoters
- (2008) F. Ozsolak et al. GENES & DEVELOPMENT
- Genome-scale spatiotemporal analysis of Caenorhabditis elegans microRNA promoter activity
- (2008) N. J. Martinez et al. GENOME RESEARCH
- Most mammalian mRNAs are conserved targets of microRNAs
- (2008) R. C. Friedman et al. GENOME RESEARCH
- Regulation of Epidermal Growth Factor Receptor Signaling in Human Cancer Cells by MicroRNA-7
- (2008) Rebecca J. Webster et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Antagomir-mediated silencing of endothelial cell specific microRNA-126 impairs ischemia-induced angiogenesis
- (2008) Coen van Solingen et al. JOURNAL OF CELLULAR AND MOLECULAR MEDICINE
- Variations in DNA elucidate molecular networks that cause disease
- (2008) Yanqing Chen et al. NATURE
- Genetics of gene expression and its effect on disease
- (2008) Valur Emilsson et al. NATURE
- Prader-Willi phenotype caused by paternal deficiency for the HBII-85 C/D box small nucleolar RNA cluster
- (2008) Trilochan Sahoo et al. NATURE GENETICS
- Variants in MTNR1B influence fasting glucose levels
- (2008) Inga Prokopenko et al. NATURE GENETICS
- Detecting microRNA binding and siRNA off-target effects from expression data
- (2008) Stijn van Dongen et al. NATURE METHODS
- The regulatory activity of microRNA* species has substantial influence on microRNA and 3′ UTR evolution
- (2008) Katsutomo Okamura et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- The database of experimentally supported targets: a functional update of TarBase
- (2008) G. L. Papadopoulos et al. NUCLEIC ACIDS RESEARCH
- miRecords: an integrated resource for microRNA-target interactions
- (2008) F. Xiao et al. NUCLEIC ACIDS RESEARCH
- Self Containment, a Property of Modular RNA Structures, Distinguishes microRNAs
- (2008) Miler T. Lee et al. PLoS Computational Biology
- MicroRNA miR-24 inhibits erythropoiesis by targeting activin type I receptor ALK4
- (2007) Q. Wang et al. BLOOD
- Relation of Birth Weight, Body Mass Index, and Change in Size from Birth to Adulthood to Insulin Resistance in a Female Twin Cohort
- (2007) Paula M. L. Skidmore et al. JOURNAL OF CLINICAL ENDOCRINOLOGY & METABOLISM
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