标题
k-OptForce: Integrating Kinetics with Flux Balance Analysis for Strain Design
作者
关键词
-
出版物
PLoS Computational Biology
Volume 10, Issue 2, Pages e1003487
出版商
Public Library of Science (PLoS)
发表日期
2014-02-21
DOI
10.1371/journal.pcbi.1003487
参考文献
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- (2013) Ali R. Zomorrodi et al. Biotechnology Journal
- Constraint-based strain design using continuous modifications (CosMos) of flux bounds finds new strategies for metabolic engineering
- (2013) Cameron Cotten et al. Biotechnology Journal
- Mechanistic analysis of multi-omics datasets to generate kinetic parameters for constraint-based metabolic models
- (2013) Cameron Cotten et al. BMC BIOINFORMATICS
- On the Use of Metabolic Control Analysis in the Optimization of Cyanobacterial Biosolar Cell Factories
- (2013) S. Andreas Angermayr et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Metabolic engineering of Saccharomyces cerevisiae: a key cell factory platform for future biorefineries
- (2012) Kuk-Ki Hong et al. CELLULAR AND MOLECULAR LIFE SCIENCES
- Kinetic modelling of central carbon metabolism inEscherichia coli
- (2012) Kirill Peskov et al. FEBS Journal
- Parameter optimization and sensitivity analysis for large kinetic models using a real-coded genetic algorithm
- (2012) Yukako Tohsato et al. GENE
- An integrated computational environment for elementary modes analysis of biochemical networks
- (2012) Paulo Maia et al. International Journal of Data Mining and Bioinformatics
- Expanding the chemical palate of cells by combining systems biology and metabolic engineering
- (2012) Kathleen A. Curran et al. METABOLIC ENGINEERING
- Mathematical optimization applications in metabolic networks
- (2012) Ali R. Zomorrodi et al. METABOLIC ENGINEERING
- Prediction of dynamic behavior of mutant strains from limited wild-type data
- (2012) Hyun-Seob Song et al. METABOLIC ENGINEERING
- Systems metabolic engineering of microorganisms for natural and non-natural chemicals
- (2012) Jeong Wook Lee et al. Nature Chemical Biology
- Metabolic engineering and flux analysis of Corynebacterium glutamicum for L-serine production
- (2012) ShuJuan Lai et al. Science China-Life Sciences
- Testing Biochemistry Revisited: How In Vivo Metabolism Can Be Understood from In Vitro Enzyme Kinetics
- (2012) Karen van Eunen et al. PLoS Computational Biology
- Integrating Flux Balance Analysis into Kinetic Models to Decipher the Dynamic Metabolism of Shewanella oneidensis MR-1
- (2012) Xueyang Feng et al. PLoS Computational Biology
- Improving the iMM904 S. cerevisiae metabolic model using essentiality and synthetic lethality data
- (2011) Ali R Zomorrodi et al. BMC Systems Biology
- Steady-state global optimization of metabolic non-linear dynamic models through recasting into power-law canonical models
- (2011) Carlos Pozo et al. BMC Systems Biology
- Genome-scale metabolic network modeling results in minimal interventions that cooperatively force carbon flux towards malonyl-CoA
- (2011) Peng Xu et al. METABOLIC ENGINEERING
- EMILiO: A fast algorithm for genome-scale strain design
- (2011) Laurence Yang et al. METABOLIC ENGINEERING
- Zea mays iRS1563: A Comprehensive Genome-Scale Metabolic Reconstruction of Maize Metabolism
- (2011) Rajib Saha et al. PLoS One
- Large-Scale Bi-Level Strain Design Approaches and Mixed-Integer Programming Solution Techniques
- (2011) Joonhoon Kim et al. PLoS One
- In Silico Identification of Gene Amplification Targets for Improvement of Lycopene Production
- (2010) H. S. Choi et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Mass Action Stoichiometric Simulation Models: Incorporating Kinetics and Regulation into Stoichiometric Models
- (2010) Neema Jamshidi et al. BIOPHYSICAL JOURNAL
- Hybrid dynamic modeling of Escherichia coli central metabolic network combining Michaelis–Menten and approximate kinetic equations
- (2010) Rafael S. Costa et al. BIOSYSTEMS
- Modeling of uncertainties in biochemical reactions
- (2010) Ljubiša Mišković et al. BIOTECHNOLOGY AND BIOENGINEERING
- Genome-scale metabolic modeling of a clostridial co-culture for consolidated bioprocessing
- (2010) Fahimeh Salimi et al. Biotechnology Journal
- Towards a genome-scale kinetic model of cellular metabolism
- (2010) Kieran Smallbone et al. BMC Systems Biology
- OptORF: Optimal metabolic and regulatory perturbations for metabolic engineering of microbial strains
- (2010) Joonhoon Kim et al. BMC Systems Biology
- Genome-scale dynamic modeling of the competition between Rhodoferax and Geobacter in anoxic subsurface environments
- (2010) Kai Zhuang et al. ISME Journal
- Integrated stoichiometric, thermodynamic and kinetic modelling of steady state metabolism
- (2010) R.M.T. Fleming et al. JOURNAL OF THEORETICAL BIOLOGY
- Modeling and simulation of the main metabolism in Escherichia coli and its several single-gene knockout mutants with experimental verification
- (2010) Tuty Kadir et al. Microbial Cell Factories
- OptForce: An Optimization Procedure for Identifying All Genetic Manipulations Leading to Targeted Overproductions
- (2010) Sridhar Ranganathan et al. PLoS Computational Biology
- Predicting metabolic engineering knockout strategies for chemical production: accounting for competing pathways
- (2009) N. Tepper et al. BIOINFORMATICS
- Constraints-based genome-scale metabolic simulation for systems metabolic engineering
- (2009) Jong Myoung Park et al. BIOTECHNOLOGY ADVANCES
- Recent developments in parameter estimation and structure identification of biochemical and genomic systems
- (2009) I-Chun Chou et al. MATHEMATICAL BIOSCIENCES
- Ensemble modeling for strain development of l-lysine-producing Escherichia coli
- (2009) Carolina A. Contador et al. METABOLIC ENGINEERING
- Enhancing sesquiterpene production in Saccharomyces cerevisiae through in silico driven metabolic engineering
- (2009) Mohammad A. Asadollahi et al. METABOLIC ENGINEERING
- Application of dynamic flux balance analysis to an industrial Escherichia coli fermentation
- (2009) Adam L. Meadows et al. METABOLIC ENGINEERING
- The elucidation of metabolic pathways and their improvements using stable optimization of large-scale kinetic models of cellular systems
- (2009) Evgeni V. Nikolaev METABOLIC ENGINEERING
- Model-driven evaluation of the production potential for growth-coupled products of Escherichia coli
- (2009) Adam M. Feist et al. METABOLIC ENGINEERING
- Ensemble Modeling for Aromatic Production in Escherichia coli
- (2009) Matthew L. Rizk et al. PLoS One
- Integrating metabolic, transcriptional regulatory and signal transduction models in Escherichia coli
- (2008) Markus W. Covert et al. BIOINFORMATICS
- Ensemble Modeling of Metabolic Networks
- (2008) Linh M. Tran et al. BIOPHYSICAL JOURNAL
- Towards systems metabolic engineering of microorganisms for amino acid production
- (2008) Jin Hwan Park et al. CURRENT OPINION IN BIOTECHNOLOGY
- Challenges in lin-log modelling of glycolysis in Lactococcus lactis
- (2008) R.C.H. del Rosario et al. IET Systems Biology
- Formulating genome-scale kinetic models in the post-genome era
- (2008) Neema Jamshidi et al. Molecular Systems Biology
- Dynamic Analysis of Integrated Signaling, Metabolic, and Regulatory Networks
- (2008) Jong Min Lee et al. PLoS Computational Biology
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