Histone Modifications Are Associated with Transcript Isoform Diversity in Normal and Cancer Cells
出版年份 2014 全文链接
标题
Histone Modifications Are Associated with Transcript Isoform Diversity in Normal and Cancer Cells
作者
关键词
-
出版物
PLoS Computational Biology
Volume 10, Issue 6, Pages e1003611
出版商
Public Library of Science (PLoS)
发表日期
2014-06-06
DOI
10.1371/journal.pcbi.1003611
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Computational analysis of associations between alternative splicing and histone modifications
- (2013) Yuki Shindo et al. FEBS LETTERS
- DNase I–hypersensitive exons colocalize with promoters and distal regulatory elements
- (2013) Tim R Mercer et al. NATURE GENETICS
- Epigenetic features are significantly associated with alternative splicing
- (2012) Yuanpeng Zhou et al. BMC GENOMICS
- Landscape of transcription in human cells
- (2012) Sarah Djebali et al. NATURE
- Architecture of the human regulatory network derived from ENCODE data
- (2012) Mark B. Gerstein et al. NATURE
- Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
- (2012) Cole Trapnell et al. Nature Protocols
- Argonaute proteins couple chromatin silencing to alternative splicing
- (2012) Maya Ameyar-Zazoua et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Combinations of Histone Modifications Mark Exon Inclusion Levels
- (2012) Stefan Enroth et al. PLoS One
- Psip1/Ledgf p52 Binds Methylated Histone H3K36 and Splicing Factors and Contributes to the Regulation of Alternative Splicing
- (2012) Madapura M. Pradeepa et al. PLoS Genetics
- Epigenetics in Alternative Pre-mRNA Splicing
- (2011) Reini F. Luco et al. CELL
- Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses
- (2011) M. N. Cabili et al. GENES & DEVELOPMENT
- CTCF-promoted RNA polymerase II pausing links DNA methylation to splicing
- (2011) Sanjeev Shukla et al. NATURE
- Initial genome sequencing and analysis of multiple myeloma
- (2011) Michael A. Chapman et al. NATURE
- Mapping and analysis of chromatin state dynamics in nine human cell types
- (2011) Jason Ernst et al. NATURE
- The genomic complexity of primary human prostate cancer
- (2011) Michael F. Berger et al. NATURE
- Integrated genomic analyses of ovarian carcinoma
- (2011) D. Bell et al. NATURE
- High order chromatin architecture shapes the landscape of chromosomal alterations in cancer
- (2011) Geoff Fudenberg et al. NATURE BIOTECHNOLOGY
- Splicing enhances recruitment of methyltransferase HYPB/Setd2 and methylation of histone H3 Lys36
- (2011) Sérgio Fernandes de Almeida et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Pre-mRNA splicing is a determinant of histone H3K36 methylation
- (2011) S. Kim et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Manipulation of FASTQ data with Galaxy
- (2010) D. Blankenberg et al. BIOINFORMATICS
- Quantitative Interaction Proteomics and Genome-wide Profiling of Epigenetic Histone Marks and Their Readers
- (2010) Michiel Vermeulen et al. CELL
- Alternative pre-mRNA splicing regulation in cancer: pathways and programs unhinged
- (2010) C. J. David et al. GENES & DEVELOPMENT
- The Dnmt3a PWWP Domain Reads Histone 3 Lysine 36 Trimethylation and Guides DNA Methylation
- (2010) Arunkumar Dhayalan et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- ERG rearrangement is specific to prostate cancer and does not occur in any other common tumor
- (2010) Veit J Scheble et al. MODERN PATHOLOGY
- The landscape of somatic copy-number alteration across human cancers
- (2010) Rameen Beroukhim et al. NATURE
- Discovery and characterization of chromatin states for systematic annotation of the human genome
- (2010) Jason Ernst et al. NATURE BIOTECHNOLOGY
- Molecular basis of histone H3K36me3 recognition by the PWWP domain of Brpf1
- (2010) Alessandro Vezzoli et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Complex Exon-Intron Marking by Histone Modifications Is Not Determined Solely by Nucleosome Distribution
- (2010) Pawandeep Dhami et al. PLoS One
- Histone modification levels are predictive for gene expression
- (2010) R. Karlic et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Regulation of Alternative Splicing by Histone Modifications
- (2010) R. F. Luco et al. SCIENCE
- TopHat: discovering splice junctions with RNA-Seq
- (2009) Cole Trapnell et al. BIOINFORMATICS
- Differential chromatin marking of introns and expressed exons by H3K36me3
- (2009) Paulina Kolasinska-Zwierz et al. NATURE GENETICS
- Nucleosome positioning as a determinant of exon recognition
- (2009) Hagen Tilgner et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Chromatin organization marks exon-intron structure
- (2009) Schraga Schwartz et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Discovery and Annotation of Functional Chromatin Signatures in the Human Genome
- (2009) Gary Hon et al. PLoS Computational Biology
- Heterochromatin Protein 1 (HP1a) Positively Regulates Euchromatic Gene Expression through RNA Transcript Association and Interaction with hnRNPs in Drosophila
- (2009) Lucia Piacentini et al. PLoS Genetics
- Alternative Splicing and Tumor Progression
- (2008) Claudia Ghigna et al. CURRENT GENOMICS
- Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing
- (2008) Qun Pan et al. NATURE GENETICS
- Combinatorial patterns of histone acetylations and methylations in the human genome
- (2008) Zhibin Wang et al. NATURE GENETICS
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started