Linking Proteomic and Transcriptional Data through the Interactome and Epigenome Reveals a Map of Oncogene-induced Signaling
出版年份 2013 全文链接
标题
Linking Proteomic and Transcriptional Data through the Interactome and Epigenome Reveals a Map of Oncogene-induced Signaling
作者
关键词
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出版物
PLoS Computational Biology
Volume 9, Issue 2, Pages e1002887
出版商
Public Library of Science (PLoS)
发表日期
2013-02-08
DOI
10.1371/journal.pcbi.1002887
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Personal Omics Profiling Reveals Dynamic Molecular and Medical Phenotypes
- (2012) Rui Chen et al. CELL
- Molecular Characterization of EGFR and EGFRvIII Signaling Networks in Human Glioblastoma Tumor Xenografts
- (2012) Hannah Johnson et al. MOLECULAR & CELLULAR PROTEOMICS
- Integrating the Alzheimer's Disease Proteome and Transcriptome: A Comprehensive Network Model of a Complex Disease
- (2012) Peter Hallock et al. OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY
- Small Molecule Antagonists of the Wnt/Beta-Catenin Signaling Pathway Target Breast Tumor-Initiating Cells in a Her2/Neu Mouse Model of Breast Cancer
- (2012) Robin M. Hallett et al. PLoS One
- The cBio Cancer Genomics Portal: An Open Platform for Exploring Multidimensional Cancer Genomics Data: Figure 1.
- (2012) Ethan Cerami et al. Cancer Discovery
- Epigenetic priors for identifying active transcription factor binding sites
- (2011) Gabriel Cuellar-Partida et al. BIOINFORMATICS
- Integrated analysis of mutations, miRNA and mRNA expression in glioblastoma
- (2011) Hua Dong et al. BMC Systems Biology
- Hallmarks of Cancer: The Next Generation
- (2011) Douglas Hanahan et al. CELL
- Synergistic Induction of Apoptosis in Brain Cancer Cells by Targeted Codelivery of siRNA and Anticancer Drugs
- (2011) Cheoljin Kim et al. MOLECULAR PHARMACEUTICS
- Global quantification of mammalian gene expression control
- (2011) Björn Schwanhäusser et al. NATURE
- PSICQUIC and PSISCORE: accessing and scoring molecular interactions
- (2011) Bruno Aranda et al. NATURE METHODS
- Pathway inhibition: emerging molecular targets for treating glioblastoma
- (2011) W. Wick et al. NEURO-ONCOLOGY
- ResponseNet: revealing signaling and regulatory networks linking genetic and transcriptomic screening data
- (2011) A. Lan et al. NUCLEIC ACIDS RESEARCH
- ChEMBL: a large-scale bioactivity database for drug discovery
- (2011) A. Gaulton et al. NUCLEIC ACIDS RESEARCH
- EGFRvIII promotes glioma angiogenesis and growth through the NF-κB, interleukin-8 pathway
- (2011) R Bonavia et al. ONCOGENE
- A User's Guide to the Encyclopedia of DNA Elements (ENCODE)
- (2011) PLOS BIOLOGY
- Comparative Analysis of Proteome and Transcriptome Variation in Mouse
- (2011) Anatole Ghazalpour et al. PLoS Genetics
- ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip data
- (2010) Lihua J Zhu et al. BMC BIOINFORMATICS
- Integrated Genomic Analysis Identifies Clinically Relevant Subtypes of Glioblastoma Characterized by Abnormalities in PDGFRA, IDH1, EGFR, and NF1
- (2010) Roel G.W. Verhaak et al. CANCER CELL
- Do Steroid Hormones Play a Role in the Etiology of Glioma?
- (2010) G. C. Kabat et al. CANCER EPIDEMIOLOGY BIOMARKERS & PREVENTION
- Wnt/beta-Catenin pathway in human glioma: expression pattern and clinical/prognostic correlations
- (2010) Ce Liu et al. CLINICAL AND EXPERIMENTAL MEDICINE
- Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data
- (2010) R. Pique-Regi et al. GENOME RESEARCH
- The Constitutive Activity of Epidermal Growth Factor Receptor vIII Leads to Activation and Differential Trafficking of Wild-type Epidermal Growth Factor Receptor and erbB2
- (2010) Reema Zeineldin et al. JOURNAL OF HISTOCHEMISTRY & CYTOCHEMISTRY
- β-Catenin overexpression in malignant glioma and its role in proliferation and apoptosis in glioblastma cells
- (2010) Xiangrong Liu et al. MEDICAL ONCOLOGY
- Unbiased, Genome-Wide In Vivo Mapping of Transcriptional Regulatory Elements Reveals Sex Differences in Chromatin Structure Associated with Sex-Specific Liver Gene Expression
- (2010) G. Ling et al. MOLECULAR AND CELLULAR BIOLOGY
- Defining the transcriptome and proteome in three functionally different human cell lines
- (2010) Emma Lundberg et al. Molecular Systems Biology
- Expander: from expression microarrays to networks and functions
- (2010) Igor Ulitsky et al. Nature Protocols
- Ensembl 2011
- (2010) P. Flicek et al. NUCLEIC ACIDS RESEARCH
- The BioGRID Interaction Database: 2011 update
- (2010) C. Stark et al. NUCLEIC ACIDS RESEARCH
- DrugBank 3.0: a comprehensive resource for 'Omics' research on drugs
- (2010) C. Knox et al. NUCLEIC ACIDS RESEARCH
- U87MG Decoded: The Genomic Sequence of a Cytogenetically Aberrant Human Cancer Cell Line
- (2010) Michael James Clark et al. PLoS Genetics
- edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
- (2009) M. D. Robinson et al. BIOINFORMATICS
- Fyn and Src Are Effectors of Oncogenic Epidermal Growth Factor Receptor Signaling in Glioblastoma Patients
- (2009) K. V. Lu et al. CANCER RESEARCH
- EGFRvIII and DNA Double-Strand Break Repair: A Molecular Mechanism for Radioresistance in Glioblastoma
- (2009) B. Mukherjee et al. CANCER RESEARCH
- 17 AAG for HSP90 Inhibition in Cancer – From Bench to Bedside
- (2009) Saad Usmani et al. CURRENT MOLECULAR MEDICINE
- Antitumor activity of natural compounds, curcumin and PKF118-310, as Wnt/β-catenin antagonists against human osteosarcoma cells
- (2009) Pay-Chin Leow et al. INVESTIGATIONAL NEW DRUGS
- The basics of epithelial-mesenchymal transition
- (2009) Raghu Kalluri et al. JOURNAL OF CLINICAL INVESTIGATION
- Phase II Trial of Vorinostat in Recurrent Glioblastoma Multiforme: A North Central Cancer Treatment Group Study
- (2009) Evanthia Galanis et al. JOURNAL OF CLINICAL ONCOLOGY
- Dasatinib-induced autophagy is enhanced in combination with temozolomide in glioma
- (2009) V. Milano et al. MOLECULAR CANCER THERAPEUTICS
- The transcriptional network for mesenchymal transformation of brain tumours
- (2009) Maria Stella Carro et al. NATURE
- Bridging high-throughput genetic and transcriptional data reveals cellular responses to alpha-synuclein toxicity
- (2009) Esti Yeger-Lotem et al. NATURE GENETICS
- Global mapping of protein-DNA interactions in vivo by digital genomic footprinting
- (2009) Jay R Hesselberth et al. NATURE METHODS
- MINT, the molecular interaction database: 2009 update
- (2009) Arnaud Ceol et al. NUCLEIC ACIDS RESEARCH
- PubChem: a public information system for analyzing bioactivities of small molecules
- (2009) Y. Wang et al. NUCLEIC ACIDS RESEARCH
- Glutamate Promotes Cell Growth by EGFR Signaling on U-87MG Human Glioblastoma Cell Line
- (2009) Daniel Pretto Schunemann et al. PATHOLOGY & ONCOLOGY RESEARCH
- The AMPK agonist AICAR inhibits the growth of EGFRvIII-expressing glioblastomas by inhibiting lipogenesis
- (2009) D. Guo et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Genome-Scale Reconstruction of Escherichia coli's Transcriptional and Translational Machinery: A Knowledge Base, Its Mathematical Formulation, and Its Functional Characterization
- (2009) Ines Thiele et al. PLoS Computational Biology
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
- Huntington's disease: from pathology and genetics to potential therapies
- (2008) Sara Imarisio et al. BIOCHEMICAL JOURNAL
- iRefIndex: A consolidated protein interaction database with provenance
- (2008) Sabry Razick et al. BMC BIOINFORMATICS
- Downregulation of Wnt2 and β-catenin by siRNA suppresses malignant glioma cell growth
- (2008) P Pu et al. CANCER GENE THERAPY
- Mechanisms of neurodegeneration in Huntington’s disease
- (2008) Joana M. Gil et al. EUROPEAN JOURNAL OF NEUROSCIENCE
- Suppression of Wnt/β-catenin signaling inhibits prostate cancer cell proliferation
- (2008) Wenyan Lu et al. EUROPEAN JOURNAL OF PHARMACOLOGY
- Identification of a PTEN-regulated STAT3 brain tumor suppressor pathway
- (2008) N. de la Iglesia et al. GENES & DEVELOPMENT
- Gene silencing for epidermal growth factor receptor variant III induces cell-specific cytotoxicity
- (2008) F. Yamoutpour et al. MOLECULAR CANCER THERAPEUTICS
- Comprehensive genomic characterization defines human glioblastoma genes and core pathways
- (2008) Roger McLendon et al. NATURE
- Efficacy of the HSP90 inhibitor 17-AAG in human glioma cell lines and tumorigenic glioma stem cells
- (2008) Claire Marie-Elisabeth Sauvageot et al. NEURO-ONCOLOGY
- Human Protein Reference Database--2009 update
- (2008) T. S. Keshava Prasad et al. NUCLEIC ACIDS RESEARCH
- Model-based Analysis of ChIP-Seq (MACS)
- (2008) Yong Zhang et al. GENOME BIOLOGY
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