Finding Associations among Histone Modifications Using Sparse Partial Correlation Networks

Signals and Combinatorial Functions of Histone Modifications

(2011) Tamaki Suganuma et al.   Annual Review of Biochemistry

Tissue-specific prediction of directly regulated genes

(2011) Robert C. McLeay et al.   BIOINFORMATICS

Histone modification profiles are predictive for tissue/cell-type specific expression of both protein-coding and microRNA genes

(2011) Zhihua Zhang et al.   BMC BIOINFORMATICS

Computational study of associations between histone modification and protein-DNA binding in yeast genome by integrating diverse information

(2011) Junbai Wang   BMC GENOMICS

Combinatorial Patterning of Chromatin Regulators Uncovered by Genome-wide Location Analysis in Human Cells

(2011) Oren Ram et al.   CELL

Learning Bayesian networks: approaches and issues

(2011) Rónán Daly et al.   KNOWLEDGE ENGINEERING REVIEW

Combinatorial patterns of histone modifications in Saccharomyces.cerevisiae

(2011) Xiang-Jun Cui et al.   YEAST

Quantitative Interaction Proteomics and Genome-wide Profiling of Epigenetic Histone Marks and Their Readers

(2010) Michiel Vermeulen et al.   CELL

Histone H2B ubiquitination and beyond

(2010) Mahesh B. Chandrasekharan et al.   Epigenetics

Discovery and characterization of chromatin states for systematic annotation of the human genome

(2010) Jason Ernst et al.   NATURE BIOTECHNOLOGY

The NIH Roadmap Epigenomics Mapping Consortium

(2010) Bradley E Bernstein et al.   NATURE BIOTECHNOLOGY

Histone H3K27ac separates active from poised enhancers and predicts developmental state

(2010) M. P. Creyghton et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Histone modification levels are predictive for gene expression

(2010) R. Karlic et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome-wide prediction of transcription factor binding sites using an integrated model

(2010) Kyoung-Jae Won et al.   GENOME BIOLOGY

Theoretical framework for the histone modification network: modifications in the unstructured histone tails form a robust scale-free network

(2009) Yohei Hayashi et al.   GENES TO CELLS

Predictive chromatin signatures in the mammalian genome

(2009) G. C. Hon et al.   HUMAN MOLECULAR GENETICS

Histone modifications at human enhancers reflect global cell-type-specific gene expression

(2009) Nathaniel D. Heintzman et al.   NATURE

Differential chromatin marking of introns and expressed exons by H3K36me3

(2009) Paulina Kolasinska-Zwierz et al.   NATURE GENETICS

Prediction of regulatory elements in mammalian genomes using chromatin signatures

(2008) Kyoung-Jae Won et al.   BMC BIOINFORMATICS

High-resolution human core-promoter prediction with CoreBoost_HM

(2008) X. Wang et al.   GENOME RESEARCH

Inferring causal relationships among different histone modifications and gene expression

(2008) H. Yu et al.   GENOME RESEARCH

H3K27me3 forms BLOCs over silent genes and intergenic regions and specifies a histone banding pattern on a mouse autosomal chromosome

(2008) F. M. Pauler et al.   GENOME RESEARCH

Monomethylation of Lysine 20 on Histone H4 Facilitates Chromatin Maturation

(2008) A. N. D. Scharf et al.   MOLECULAR AND CELLULAR BIOLOGY

Cyclical DNA methylation of a transcriptionally active promoter

(2008) Raphaël Métivier et al.   NATURE

Transient cyclical methylation of promoter DNA

(2008) Sara Kangaspeska et al.   NATURE

Combinatorial patterns of histone acetylations and methylations in the human genome

(2008) Zhibin Wang et al.   NATURE GENETICS