Chapter 16: Text Mining for Translational Bioinformatics

An overview of MetaMap: historical perspective and recent advances

(2014) Alan R Aronson et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

BioLemmatizer: a lemmatization tool for morphological processing of biomedical text

(2012) Haibin Liu et al.   Journal of Biomedical Semantics

Pharmacogenomics: “Noninferiority” Is Sufficient for Initial Implementation

(2011) R B Altman   CLINICAL PHARMACOLOGY & THERAPEUTICS

2010 i2b2/VA challenge on concepts, assertions, and relations in clinical text

(2011) Özlem Uzuner et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

The structural and content aspects of abstracts versus bodies of full text journal articles are different

(2010) K Bretonnel Cohen et al.   BMC BIOINFORMATICS

Exploring Species-Based Strategies for Gene Normalization

(2010) Karin Verspoor et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Extracting medication information from clinical text

(2010) Özlem Uzuner et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

Text mining and manual curation of chemical-gene-disease networks for the Comparative Toxicogenomics Database (CTD)

(2009) Thomas C Wiegers et al.   BMC BIOINFORMATICS

Molecular Phenotypes Distinguish Patients with Relatively Stable from Progressive Idiopathic Pulmonary Fibrosis (IPF)

(2009) Kathy Boon et al.   PLoS One

OpenDMAP: An open source, ontology-driven concept analysis engine, with applications to capturing knowledge regarding protein transport, protein interactions and cell-type-specific gene expression

(2008) Lawrence Hunter et al.   BMC BIOINFORMATICS

Concept recognition for extracting protein interaction relations from biomedical text

(2008) William A Baumgartner et al.   GENOME BIOLOGY