Combinatorial Binding in Human and Mouse Embryonic Stem Cells Identifies Conserved Enhancers Active in Early Embryonic Development

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High conservation of transcription factor binding and evidence for combinatorial regulation across six Drosophila species

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Hooking Up with Oct4

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An Oct4-Centered Protein Interaction Network in Embryonic Stem Cells

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GREAT improves functional interpretation of cis-regulatory regions

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ChIP-Seq identification of weakly conserved heart enhancers

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Transposable elements have rewired the core regulatory network of human embryonic stem cells

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A Data Integration Approach to Mapping OCT4 Gene Regulatory Networks Operative in Embryonic Stem Cells and Embryonal Carcinoma Cells

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Histone H3K27ac separates active from poised enhancers and predicts developmental state

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Five-Vertebrate ChIP-seq Reveals the Evolutionary Dynamics of Transcription Factor Binding

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Proteomic Analysis of Sox2-Associated Proteins During Early Stages of Mouse Embryonic Stem Cell Differentiation Identifies Sox21 as a Novel Regulator of Stem Cell Fate

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Deeply conserved chordate noncoding sequences preserve genome synteny but do not drive gene duplicate retention

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ChIP-seq accurately predicts tissue-specific activity of enhancers

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ChIP–seq: advantages and challenges of a maturing technology

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Integration of External Signaling Pathways with the Core Transcriptional Network in Embryonic Stem Cells

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An Extended Transcriptional Network for Pluripotency of Embryonic Stem Cells

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Role for Med12 in Regulation ofNanogand Nanog Target Genes

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The amphioxus genome and the evolution of the chordate karyotype

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Model-based Analysis of ChIP-Seq (MACS)

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