Computation of Steady-State Probability Distributions in Stochastic Models of Cellular Networks

Noise Reduction by Diffusional Dissipation in a Minimal Quorum Sensing Motif

(2011) Yu Tanouchi et al.   PLoS Computational Biology

Identification from stochastic cell-to-cell variation: a genetic switch case study

(2010) B. Munsky et al.   IET Systems Biology

Bacteria determine fate by playing dice with controlled odds

(2010) E. Ben-Jacob et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Biological role of noise encoded in a genetic network motif

(2010) M. Kittisopikul et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Probability landscape of heritable and robust epigenetic state of lysogeny in phage lambda

(2010) Y. Cao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Quantifying E. coli Proteome and Transcriptome with Single-Molecule Sensitivity in Single Cells

(2010) Y. Taniguchi et al.   SCIENCE

Stochastic E2F Activation and Reconciliation of Phenomenological Cell-Cycle Models

(2010) Tae J. Lee et al.   PLOS BIOLOGY

Stochastic Models and Numerical Algorithms for a Class of Regulatory Gene Networks

(2009) Thomas Fournier et al.   BULLETIN OF MATHEMATICAL BIOLOGY

Architecture-Dependent Noise Discriminates Functionally Analogous Differentiation Circuits

(2009) Tolga Çağatay et al.   CELL

A chance at survival: gene expression noise and phenotypic diversification strategies

(2009) Dawn Fraser et al.   MOLECULAR MICROBIOLOGY

Listening to the noise: random fluctuations reveal gene network parameters

(2009) Brian Munsky et al.   Molecular Systems Biology

Emergent bistability by a growth-modulating positive feedback circuit

(2009) Cheemeng Tan et al.   Nature Chemical Biology

A stochastic spectral analysis of transcriptional regulatory cascades

(2009) A. M. Walczak et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Deciding fate in adverse times: Sporulation and competence inBacillus subtilis

(2009) Daniel Schultz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Regulated Fluctuations in Nanog Expression Mediate Cell Fate Decisions in Embryonic Stem Cells

(2009) Tibor Kalmar et al.   PLOS BIOLOGY

Optimal enumeration of state space of finitely buffered stochastic molecular networks and exact computation of steady state landscape probability

(2008) Youfang Cao et al.   BMC Systems Biology

Colored extrinsic fluctuations and stochastic gene expression

(2008) Vahid Shahrezaei et al.   Molecular Systems Biology

A bistable Rb–E2F switch underlies the restriction point

(2008) Guang Yao et al.   NATURE CELL BIOLOGY

Stochastic switching as a survival strategy in fluctuating environments

(2008) Murat Acar et al.   NATURE GENETICS

Regulatory activity revealed by dynamic correlations in gene expression noise

(2008) Mary J Dunlop et al.   NATURE GENETICS

Potential landscape and flux framework of nonequilibrium networks: Robustness, dissipation, and coherence of biochemical oscillations

(2008) J. Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Signatures of combinatorial regulation in intrinsic biological noise

(2008) A. Warmflash et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Using noise to probe and characterize gene circuits

(2008) C. D. Cox et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Stochasticity and Cell Fate

(2008) R. Losick et al.   SCIENCE