Selection upon Genome Architecture: Conservation of Functional Neighborhoods with Changing Genes

Genomic neighbourhood and the regulation of gene expression

(2010) Subhajyoti De et al.   CURRENT OPINION IN CELL BIOLOGY

A three-dimensional model of the yeast genome

(2010) Zhijun Duan et al.   NATURE

Babelomics: an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling

(2010) Ignacio Medina et al.   NUCLEIC ACIDS RESEARCH

The impact of genomic neighborhood on the evolution of human and chimpanzee transcriptome

(2009) S. De et al.   GENOME RESEARCH

A burst of segmental duplications in the genome of the African great ape ancestor

(2009) Tomas Marques-Bonet et al.   NATURE

Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome

(2009) E. Lieberman-Aiden et al.   SCIENCE

Stochasticity in Protein Levels Drives Colinearity of Gene Order in Metabolic Operons of Escherichia coli

(2009) Károly Kovács et al.   PLOS BIOLOGY

Coexpression of Linked Genes in Mammalian Genomes Is Generally Disadvantageous

(2008) B.-Y. Liao et al.   MOLECULAR BIOLOGY AND EVOLUTION

Babelomics: advanced functional profiling of transcriptomics, proteomics and genomics experiments

(2008) F. Al-Shahrour et al.   NUCLEIC ACIDS RESEARCH

Ensembl 2009

(2008) T. J. P. Hubbard et al.   NUCLEIC ACIDS RESEARCH

Chromosomal Inversions between Human and Chimpanzee Lineages Caused by Retrotransposons

(2008) Jungnam Lee et al.   PLoS One

Coexpression, coregulation, and cofunctionality of neighboring genes in eukaryotic genomes

(2007) Pawel Michalak   GENOMICS