Simultaneous Genome-Wide Inference of Physical, Genetic, Regulatory, and Functional Pathway Components

Modular composition predicts kinase/substrate interactions

(2010) Yichuan Liu et al.   BMC BIOINFORMATICS

Snf1 Controls the Activity of Adr1 Through Dephosphorylation of Ser230

(2009) S. Ratnakumar et al.   GENETICS

Exploring the human genome with functional maps

(2009) C. Huttenhower et al.   GENOME RESEARCH

Global networks of functional coupling in eukaryotes from comprehensive data integration

(2009) A. Alexeyenko et al.   GENOME RESEARCH

Computationally Driven, Quantitative Experiments Discover Genes Required for Mitochondrial Biogenesis

(2009) David C. Hess et al.   PLoS Genetics

The Sleipnir library for computational functional genomics

(2008) C. Huttenhower et al.   BIOINFORMATICS

GraphCrunch: A tool for large network analyses

(2008) Tijana Milenković et al.   BMC BIOINFORMATICS

Comprehensive phenotypic analysis for identification of genes affecting growth under ethanol stress inSaccharomyces cerevisiae

(2008) Katsunori Yoshikawa et al.   FEMS YEAST RESEARCH

The Predikin webserver: improved prediction of protein kinase peptide specificity using structural information

(2008) N. F. W. Saunders et al.   NUCLEIC ACIDS RESEARCH

Petabyte-scale innovations at the European Nucleotide Archive

(2008) G. Cochrane et al.   NUCLEIC ACIDS RESEARCH

Predicting Co-Complexed Protein Pairs from Heterogeneous Data

(2008) Jian Qiu et al.   PLoS Computational Biology

Predicting gene function in a hierarchical context with an ensemble of classifiers

(2008) Yuanfang Guan et al.   GENOME BIOLOGY