An Evolutionary Model-Based Algorithm for Accurate Phylogenetic Breakpoint Mapping and Subtype Prediction in HIV-1

Identification of two new CRF_BF in Rio de Janeiro State, Brazil

(2009) Monick L Guimarães et al.   AIDS

Effect of HIV‐1 Subtype on Virologic and Immunologic Response to Starting Highly Active Antiretroviral Therapy

(2009) Anna Maria Geretti et al.   CLINICAL INFECTIOUS DISEASES

Drug Resistance Mutations for Surveillance of Transmitted HIV-1 Drug-Resistance: 2009 Update

(2009) Diane E. Bennett et al.   PLoS One

HIV Subtypes Induce Distinct Profiles of HIV-Specific CD8+ T Cell Responses

(2008) Chris A.R. Baker et al.   AIDS RESEARCH AND HUMAN RETROVIRUSES

Discrepancies in Assignment of Subtype/Recombinant Forms by Genotyping Programs for HIV Type 1 Drug Resistance Testing May Falsely Predict Superinfection

(2008) Michel Ntemgwa et al.   AIDS RESEARCH AND HUMAN RETROVIRUSES

The HIV Type 1 Epidemic in Bulgaria Involves Multiple Subtypes and Is Sustained by Continuous Viral Inflow from West and East European Countries

(2008) Marco Salemi et al.   AIDS RESEARCH AND HUMAN RETROVIRUSES

Reliability of Rapid Subtyping Tools Compared to That of Phylogenetic Analysis for Characterization of Human Immunodeficiency Virus Type 1 Non-B Subtypes and Recombinant Forms

(2008) A. Holguin et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Effect of Human Immunodeficiency Virus Type 1 (HIV‐1) Subtype on Disease Progression in Persons from Rakai, Uganda, with Incident HIV‐1 Infection

(2008) Noah Kiwanuka et al.   JOURNAL OF INFECTIOUS DISEASES

An exploratory algorithm to identify intra-host recombinant viral sequences

(2008) Marco Salemi et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Alignment Uncertainty and Genomic Analysis

(2008) K. M. Wong et al.   SCIENCE

Evolutionary Modeling of Rate Shifts Reveals Specificity Determinants in HIV-1 Subtypes

(2008) Osnat Penn et al.   PLoS Computational Biology