Biomedical Text Mining and Its Applications

Figure mining for biomedical research

(2009) R. Rodriguez-Esteban et al.   BIOINFORMATICS

U-Compare: share and compare text mining tools with UIMA

(2009) Y. Kano et al.   BIOINFORMATICS

High-performance gene name normalization with GENO

(2009) J. Wermter et al.   BIOINFORMATICS

Improving classification in protein structure databases using text mining

(2009) Antonis Koussounadis et al.   BMC BIOINFORMATICS

Arrowsmith two-node search interface: A tutorial on finding meaningful links between two disparate sets of articles in MEDLINE

(2009) Neil R. Smalheiser et al.   COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE

Open-access policy flourishes at NIH

(2009) Meredith Wadman   NATURE

GoGene: gene annotation in the fast lane

(2009) C. Plake et al.   NUCLEIC ACIDS RESEARCH

Biomedical Discovery Acceleration, with Applications to Craniofacial Development

(2009) Sonia M. Leach et al.   PLoS Computational Biology

Getting Started in Text Mining: Part Two

(2009) Andrey Rzhetsky et al.   PLoS Computational Biology

FACTA: a text search engine for finding associated biomedical concepts

(2008) Y. Tsuruoka et al.   BIOINFORMATICS

Multi-dimensional classification of biomedical text: Toward automated, practical provision of high-utility text to diverse users

(2008) H. Shatkay et al.   BIOINFORMATICS

Yale Image Finder (YIF): a new search engine for retrieving biomedical images

(2008) S. Xu et al.   BIOINFORMATICS

Seeking a New Biology through Text Mining

(2008) Andrey Rzhetsky et al.   CELL

E3Miner: a text mining tool for ubiquitin-protein ligases

(2008) Hodong Lee et al.   NUCLEIC ACIDS RESEARCH

PolySearch: a web-based text mining system for extracting relationships between human diseases, genes, mutations, drugs and metabolites

(2008) D. Cheng et al.   NUCLEIC ACIDS RESEARCH

Getting Started in Text Mining

(2008) K. Bretonnel Cohen et al.   PLoS Computational Biology

A Biomedically Enriched Collection of 7000 Human ORF Clones

(2008) Andreas Rolfs et al.   PLoS One

Drug Target Identification Using Side-Effect Similarity

(2008) M. Campillos et al.   SCIENCE

Overview of BioCreative II gene normalization

(2008) Alexander A Morgan et al.   GENOME BIOLOGY

Rapid identification of PAX2/5/8 direct downstream targets in the otic vesicle by combinatorial use of bioinformatics tools

(2008) Mirana Ramialison et al.   GENOME BIOLOGY

Introducing meta-services for biomedical information extraction

(2008) Florian Leitner et al.   GENOME BIOLOGY

Linking genes to literature: text mining, information extraction, and retrieval applications for biology

(2008) Martin Krallinger et al.   GENOME BIOLOGY

Anni 2.0: a multipurpose text-mining tool for the life sciences

(2008) Rob Jelier et al.   GENOME BIOLOGY