A Quick Guide for Developing Effective Bioinformatics Programming Skills

CloudBurst: highly sensitive read mapping with MapReduce

(2009) M. C. Schatz   BIOINFORMATICS

Biopython: freely available Python tools for computational molecular biology and bioinformatics

(2009) P. J. A. Cock et al.   BIOINFORMATICS

An introduction to scripting in Ruby for biologists

(2009) Jan Aerts et al.   BMC BIOINFORMATICS

Accelerating molecular dynamic simulation on graphics processing units

(2009) Mark S. Friedrichs et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

BioPortal: ontologies and integrated data resources at the click of a mouse

(2009) N. F. Noy et al.   NUCLEIC ACIDS RESEARCH

BioJava: an open-source framework for bioinformatics

(2008) R. C. G. Holland et al.   BIOINFORMATICS

GeneChaser: Identifying all biological and clinical conditions in which genes of interest are differentially expressed

(2008) Rong Chen et al.   BMC BIOINFORMATICS

Accelerating String Set Matching in FPGA Hardware for Bioinformatics Research

(2008) Yoginder S Dandass et al.   BMC BIOINFORMATICS

MEGA: A biologist-centric software for evolutionary analysis of DNA and protein sequences

(2008) S. Kumar et al.   BRIEFINGS IN BIOINFORMATICS

MapReduce

(2008) Jeffrey Dean et al.   COMMUNICATIONS OF THE ACM

Explicit design of FPGA-based coprocessors for short-range force computations in molecular dynamics simulations

(2008) Yongfeng Gu et al.   PARALLEL COMPUTING