Rapid De Novo Evolution of X Chromosome Dosage Compensation in Silene latifolia, a Plant with Young Sex Chromosomes

Sex Chromosomes in Land Plants

(2011) Ray Ming et al.   Annual Review of Plant Biology

Comparative high-throughput transcriptome sequencing and development of SiESTa, the Silene EST annotation database

(2011) Nicolas Blavet et al.   BMC GENOMICS

General lack of global dosage compensation in ZZ/ZW systems? Broadening the perspective with RNA-seq

(2011) Jochen BW Wolf et al.   BMC GENOMICS

Preservation of the Y Transcriptome in a 10-Million-Year-Old Plant Sex Chromosome System

(2011) Roberta Bergero et al.   CURRENT BIOLOGY

Plant Sex Chromosomes: A Non-Degenerated Y?

(2011) Doris Bachtrog   CURRENT BIOLOGY

Plant Y Chromosome Degeneration Is Retarded by Haploid Purifying Selection

(2011) Margarita V. Chibalina et al.   CURRENT BIOLOGY

SOME INCONVENIENT TRUTHS ABOUT SEX CHROMOSOME DOSAGE COMPENSATION AND THE POTENTIAL ROLE OF SEXUAL CONFLICT

(2011) Judith E. Mank et al.   EVOLUTION

Getting a Full Dose? Reconsidering Sex Chromosome Dosage Compensation in the Silkworm, Bombyx mori

(2011) James R. Walters et al.   Genome Biology and Evolution

Lack of Global Dosage Compensation in Schistosoma mansoni, a Female-Heterogametic Parasite

(2011) Beatriz Vicoso et al.   Genome Biology and Evolution

Evaluation of next-generation sequencing software in mapping and assembly

(2011) Suying Bao et al.   JOURNAL OF HUMAN GENETICS

Evidence for compensatory upregulation of expressed X-linked genes in mammals, Caenorhabditis elegans and Drosophila melanogaster

(2011) Xinxian Deng et al.   NATURE GENETICS

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

Sex-chromosome evolution: recent progress and the influence of male and female heterogamety

(2011) Hans Ellegren   NATURE REVIEWS GENETICS

Genotype and SNP calling from next-generation sequencing data

(2011) Rasmus Nielsen et al.   NATURE REVIEWS GENETICS

Multiple Nuclear Gene Phylogenetic Analysis of the Evolution of Dioecy and Sex Chromosomes in the Genus Silene

(2011) Gabriel A. B. Marais et al.   PLoS One

From RNA-seq reads to differential expression results

(2011) Alicia Oshlack et al.   GENOME BIOLOGY

Extensive loss of translational genes in the structurally dynamic mitochondrial genome of the angiosperm Silene latifolia

(2010) Daniel B Sloan et al.   BMC EVOLUTIONARY BIOLOGY

Dosage Compensation and Demasculinization of X Chromosomes in Drosophila

(2010) Doris Bachtrog et al.   CURRENT BIOLOGY

Sex bias and dosage compensation in the zebra finch versus chicken genomes: General and specialized patterns among birds

(2010) Y. Itoh et al.   GENOME RESEARCH

A new plant sex-linked gene with high sequence diversity and possible introgression of the X copy

(2010) V B Kaiser et al.   HEREDITY

Female-Biased Expression on the X Chromosome as a Key Step in Sex Chromosome Evolution in Threespine Sticklebacks

(2010) Erica H. Leder et al.   MOLECULAR BIOLOGY AND EVOLUTION

De novo assembly and analysis of RNA-seq data

(2010) Gordon Robertson et al.   NATURE METHODS

Nucleotide diversity in Silene latifolia autosomal and sex-linked genes

(2010) S. Qiu et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The impact of the triploid block on the origin and evolution of polyploid plants

(2010) Claudia Köhler et al.   TRENDS IN GENETICS

Genomic Analyses of Sex Chromosome Evolution

(2009) Melissa A. Wilson et al.   Annual Review of Genomics and Human Genetics

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Unravelling the evolutionary origins of X chromosome inactivation in mammals: insights from marsupials and monotremes

(2009) Janine E. Deakin et al.   CHROMOSOME RESEARCH

Progress and prospects toward our understanding of the evolution of dosage compensation

(2009) Beatriz Vicoso et al.   CHROMOSOME RESEARCH

X inactivation and the complexities of silencing a sex chromosome

(2009) Jennifer Chow et al.   CURRENT OPINION IN CELL BIOLOGY

Footprints of Inversions at Present and Past Pseudoautosomal Boundaries in Human Sex Chromosomes

(2009) Claire Lemaitre et al.   Genome Biology and Evolution

ABySS: A parallel assembler for short read sequence data

(2009) J. T. Simpson et al.   GENOME RESEARCH

Silene as a model system in ecology and evolution

(2009) G Bernasconi et al.   HEREDITY

Slcyt, a Newly Identified Sex-Linked Gene, Has Recently Moved onto the X Chromosome in Silene latifolia (Caryophyllaceae)

(2009) V. B. Kaiser et al.   MOLECULAR BIOLOGY AND EVOLUTION

The gene balance hypothesis: implications for gene regulation, quantitative traits and evolution

(2009) James A. Birchler et al.   NEW PHYTOLOGIST

The W, X, Y and Z of sex-chromosome dosage compensation

(2009) Judith E. Mank   TRENDS IN GENETICS

Evolution and Survival on Eutherian Sex Chromosomes

(2009) Melissa A. Wilson et al.   PLoS Genetics

Weird Animal Genomes and the Evolution of Vertebrate Sex and Sex Chromosomes

(2008) Jennifer A. Marshall Graves   Annual Review of Genetics

Survey of repetitive sequences in Silene latifolia with respect to their distribution on sex chromosomes

(2008) Tomas Cermak et al.   CHROMOSOME RESEARCH

Evidence for Degeneration of the Y Chromosome in the Dioecious Plant Silene latifolia

(2008) Gabriel A.B. Marais et al.   CURRENT BIOLOGY

Active Miniature Transposons From a Plant Genome and Its Nonrecombining Y Chromosome

(2008) R. Bergero et al.   GENETICS

The Temporal Dynamics of Processes Underlying Y Chromosome Degeneration

(2008) D. Bachtrog   GENETICS

Independent Origin of Sex Chromosomes in Two Species of the Genus Silene

(2008) Martina Mrackova et al.   GENETICS

Defining Regions and Rearrangements of the Silene latifolia Y Chromosome

(2008) R. Bergero et al.   GENETICS

Muller's Ratchet and the Degeneration of Y Chromosomes: A Simulation Study

(2008) J. Engelstadter   GENETICS

Bird-like sex chromosomes of platypus imply recent origin of mammal sex chromosomes

(2008) F. Veyrunes et al.   GENOME RESEARCH

All dosage compensation is local: Gene-by-gene regulation of sex-biased expression on the chicken Z chromosome

(2008) J E Mank et al.   HEREDITY

Dosage analysis of Z chromosome genes using microarray in silkworm, Bombyx mori

(2008) Xingfu Zha et al.   INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY

Chromosomal Gene Movements Reflect the Recent Origin and Biology of Therian Sex Chromosomes

(2008) Lukasz Potrzebowski et al.   PLOS BIOLOGY

The Status of Dosage Compensation in the Multiple X Chromosomes of the Platypus

(2008) Janine E. Deakin et al.   PLoS Genetics

Neo-sex chromosomes in the black muntjac recapitulate incipient evolution of mammalian sex chromosomes

(2008) Qi Zhou et al.   GENOME BIOLOGY