Evolutionarily Conserved Linkage between Enzyme Fold, Flexibility, and Catalysis

Discovering Conformational Sub-States Relevant to Protein Function

(2011) Arvind Ramanathan et al.   PLoS One

The Tail Wagging the Dog: Insights into Catalysis in R67 Dihydrofolate Reductase

(2010) Ganesh Kamath et al.   BIOCHEMISTRY

An Online Approach for Mining Collective Behaviors from Molecular Dynamics Simulations

(2010) Arvind Ramanathan et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Molecular Dynamics Simulation of Bovine Pancreatic Ribonuclease A−CpA and Transition State-like Complexes

(2010) Elena Formoso et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Slow Conformational Motions That Favor Sub-picosecond Motions Important for Catalysis

(2010) J. R. Exequiel T. Pineda et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Millisecond timescale fluctuations in dihydrofolate reductase are exquisitely sensitive to the bound ligands

(2010) D. D. Boehr et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Flexibility of a Distant Loop Modulates Active Site Motion and Product Release in Ribonuclease A

(2009) Nicolas Doucet et al.   BIOCHEMISTRY

Computational Identification of Slow Conformational Fluctuations in Proteins

(2009) Arvind Ramanathan et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Hidden alternative structures of proline isomerase essential for catalysis

(2009) James S. Fraser et al.   NATURE

Enzymatic transition states and dynamic motion in barrier crossing

(2009) Steven D Schwartz et al.   Nature Chemical Biology

A 21st century revisionist's view at a turning point in enzymology

(2009) Zachary D Nagel et al.   Nature Chemical Biology

Enzyme millisecond conformational dynamics do not catalyze the chemical step

(2009) A. V. Pisliakov et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Free-Energy Landscape of Enzyme Catalysis†

(2008) Stephen J. Benkovic et al.   BIOCHEMISTRY

Evolutionary conservation of protein vibrational dynamics

(2008) Sandra Maguid et al.   GENE

Correspondences between low-energy modes in enzymes: Dynamics-based alignment of enzymatic functional families

(2008) Andrea Zen et al.   PROTEIN SCIENCE

Surface Sites for Engineering Allosteric Control in Proteins

(2008) J. Lee et al.   SCIENCE