Systems analysis of transcription factor activities in environments with stable and dynamic oxygen concentrations

Transcript Profiling and Inference ofEscherichia coliK-12 ArcA Activity across the Range of Physiologically Relevant Oxygen Concentrations

(2011) Matthew D. Rolfe et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Reprogramming of Escherichia coli K-12 Metabolism during the Initial Phase of Transition from an Anaerobic to a Micro-Aerobic Environment

(2011) Eleanor W. Trotter et al.   PLoS One

TFInfer: a tool for probabilistic inference of transcription factor activities

(2010) H. M. S. Asif et al.   BIOINFORMATICS

Learning combinatorial transcriptional dynamics from gene expression data

(2010) Manfred Opper et al.   BIOINFORMATICS

Peroxynitrite Toxicity inEscherichia coliK12 Elicits Expression of Oxidative Stress Responses and Protein Nitration and Nitrosylation

(2010) Samantha McLean et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Compensations for Diminished Terminal Oxidase Activity inEscherichia coli

(2010) Mark Shepherd et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

EcoCyc: a comprehensive database of Escherichia coli biology

(2010) I. M. Keseler et al.   NUCLEIC ACIDS RESEARCH

Switching regulatory models of cellular stress response

(2009) Guido Sanguinetti et al.   BIOINFORMATICS

The ArcBA Two-Component System of Escherichia coli Is Regulated by the Redox State of both the Ubiquinone and the Menaquinone Pool

(2009) M. Bekker et al.   JOURNAL OF BACTERIOLOGY

Mycobacterium tuberculosiscAMP Receptor Protein (Rv3676) Differs from the Escherichia coli Paradigm in Its cAMP Binding and DNA Binding Properties and Transcription Activation Properties

(2009) Melanie Stapleton et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The O2 sensitivity of the transcription factor FNR is controlled by Ser24 modulating the kinetics of [4Fe-4S] to [2Fe-2S] conversion

(2009) A. J. Jervis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA