H3K4me3 inversely correlates with DNA methylation at a large class of non-CpG-island-containing start sites

Tissue-specific demethylation in CpG-poor promoters during cellular differentiation

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DNA methylation directly silences genes with non-CpG island promoters and establishes a nucleosome occupied promoter

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KDM1B is a histone H3K4 demethylase required to establish maternal genomic imprints

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PANTHER version 7: improved phylogenetic trees, orthologs and collaboration with the Gene Ontology Consortium

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F-Seq: a feature density estimator for high-throughput sequence tags

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High-Resolution Mapping and Characterization of Open Chromatin across the Genome

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Bone morphogenic protein 3 inactivation is an early and frequent event in colorectal cancer development

(2008) Kim Loh et al.   GENES CHROMOSOMES & CANCER

Mapping short DNA sequencing reads and calling variants using mapping quality scores

(2008) H. Li et al.   GENOME RESEARCH

The lysine demethylase LSD1 (KDM1) is required for maintenance of global DNA methylation

(2008) Jing Wang et al.   NATURE GENETICS

Gene silencing in cancer by histone H3 lysine 27 trimethylation independent of promoter DNA methylation

(2008) Yutaka Kondo et al.   NATURE GENETICS

Frequent switching of Polycomb repressive marks and DNA hypermethylation in the PC3 prostate cancer cell line

(2008) E. N. Gal-Yam et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Nascent RNA Sequencing Reveals Widespread Pausing and Divergent Initiation at Human Promoters

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