A quantitative reference transcriptome for Nematostella vectensis early embryonic development: a pipeline for de novo assembly in emerging model systems
出版年份 2013 全文链接
标题
A quantitative reference transcriptome for Nematostella vectensis early embryonic development: a pipeline for de novo assembly in emerging model systems
作者
关键词
Transcriptome, Gene regulatory network, <em class=EmphasisTypeItalic >Nematostella</em> embryonic development, Body plan evolution, Next-generation sequencing, Illumina HiSeq, Trinity, Oases, RNA-seq
出版物
EvoDevo
Volume 4, Issue 1, Pages 16
出版商
Springer Nature
发表日期
2013-06-03
DOI
10.1186/2041-9139-4-16
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels
- (2012) Marcel H. Schulz et al. BIOINFORMATICS
- Transcriptome profiling of the demosponge Amphimedon queenslandica reveals genome-wide events that accompany major life cycle transitions
- (2012) Cecilia Conaco et al. BMC GENOMICS
- Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis
- (2012) Q. Tu et al. GENOME RESEARCH
- Challenges and strategies in transcriptome assembly and differential gene expression quantification. A comprehensivein silicoassessment of RNA-seq experiments
- (2012) Nagarjun Vijay et al. MOLECULAR ECOLOGY
- Evaluating de Bruijn Graph Assemblers on 454 Transcriptomic Data
- (2012) Xianwen Ren et al. PLoS One
- A Framework for the Establishment of a Cnidarian Gene Regulatory Network for “Endomesoderm” Specification: The Inputs of ß-Catenin/TCF Signaling
- (2012) Eric Röttinger et al. PLoS Genetics
- Optimizing de novo transcriptome assembly from short-read RNA-Seq data: a comparative study
- (2011) Qiong-Yi Zhao et al. BMC BIOINFORMATICS
- RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
- (2011) Bo Li et al. BMC BIOINFORMATICS
- Evaluation of external RNA controls for the standardisation of gene expression biomarker measurements
- (2011) Alison S Devonshire et al. BMC GENOMICS
- De novo assembly and characterization of a maternal and developmental transcriptome for the emerging model crustacean Parhyale hawaiensis
- (2011) Victor Zeng et al. BMC GENOMICS
- The maternal and early embryonic transcriptome of the milkweed bug Oncopeltus fasciatus
- (2011) Ben Ewen-Campen et al. BMC GENOMICS
- Functional roles of Notch signaling in the cnidarian Nematostella vectensis
- (2011) Heather Marlow et al. DEVELOPMENTAL BIOLOGY
- Differential expression in RNA-seq: A matter of depth
- (2011) S. Tarazona et al. GENOME RESEARCH
- Full-length transcriptome assembly from RNA-Seq data without a reference genome
- (2011) Manfred G Grabherr et al. NATURE BIOTECHNOLOGY
- Next-generation transcriptome assembly
- (2011) Jeffrey A. Martin et al. NATURE REVIEWS GENETICS
- Assembling Neural Crest Regulatory Circuits into a Gene Regulatory Network
- (2010) Paola Betancur et al. Annual Review of Cell and Developmental Biology
- Structure and expression of conserved Wnt pathway components in the demosponge Amphimedon queenslandica
- (2010) Maja Adamska et al. EVOLUTION & DEVELOPMENT
- Assembly algorithms for next-generation sequencing data
- (2010) Jason R. Miller et al. GENOMICS
- De novo assembly and analysis of RNA-seq data
- (2010) Gordon Robertson et al. NATURE METHODS
- Biases in Illumina transcriptome sequencing caused by random hexamer priming
- (2010) Kasper D. Hansen et al. NUCLEIC ACIDS RESEARCH
- De novo assembly of human genomes with massively parallel short read sequencing
- (2009) R. Li et al. GENOME RESEARCH
- Nearly complete rRNA genes assembled from across the metazoan animals: Effects of more taxa, a structure-based alignment, and paired-sites evolutionary models on phylogeny reconstruction
- (2009) Jon Mallatt et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Assessing the root of bilaterian animals with scalable phylogenomic methods
- (2009) A. Hejnol et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
- (2008) D. R. Zerbino et al. GENOME RESEARCH
- Broad phylogenomic sampling improves resolution of the animal tree of life
- (2008) Casey W. Dunn et al. NATURE
- Properties of developmental gene regulatory networks
- (2008) E. H. Davidson et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Find the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
SearchCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now