RNA-seq analysis of synovial fibroblasts brings new insights into rheumatoid arthritis

Blockade of the hedgehog pathway inhibits osteophyte formation in arthritis

(2012) Gisela Ruiz-Heiland et al.   ANNALS OF THE RHEUMATIC DISEASES

Interactions of the complement system with molecules of extracellular matrix: Relevance for joint diseases

(2012) Kaisa E. Happonen et al.   IMMUNOBIOLOGY

CutA Divalent Cation Tolerance Homolog (Escherichia coli) (CUTA) Regulates β-Cleavage of β-Amyloid Precursor Protein (APP) through Interacting with β-Site APP Cleaving Protein 1 (BACE1)

(2012) Yingjun Zhao et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

RNA-seq Reveals Novel Transcriptome of Genes and Their Isoforms in Human Pulmonary Microvascular Endothelial Cells Treated with Thrombin

(2012) Li Qin Zhang et al.   PLoS One

IL-26 Is Overexpressed in Rheumatoid Arthritis and Induces Proinflammatory Cytokine Production and Th17 Cell Generation

(2012) Murielle Corvaisier et al.   PLOS BIOLOGY

Transcriptome analysis reveals specific changes in osteoarthritis synovial fibroblasts

(2011) Manuel J Del Rey et al.   ANNALS OF THE RHEUMATIC DISEASES

Pathophysiology of rheumatoid arthritis

(2011) Faye AH Cooles et al.   CURRENT OPINION IN RHEUMATOLOGY

New therapies in the management of rheumatoid arthritis

(2011) Maya H Buch et al.   CURRENT OPINION IN RHEUMATOLOGY

Genome-wide genetic marker discovery and genotyping using next-generation sequencing

(2011) John W. Davey et al.   NATURE REVIEWS GENETICS

Whole Transcriptome Sequencing Reveals Gene Expression and Splicing Differences in Brain Regions Affected by Alzheimer's Disease

(2011) Natalie A. Twine et al.   PLoS One

The transcriptional response of normal and rheumatoid arthritis synovial fibroblasts to hypoxia

(2010) Manuel J. Del Rey et al.   ARTHRITIS AND RHEUMATISM

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Protein phosphatase-1 regulates Akt1 signal transduction pathway to control gene expression, cell survival and differentiation

(2010) L Xiao et al.   CELL DEATH AND DIFFERENTIATION

The Axis of Thrombospondin-1, Transforming Growth Factor Beta and Connective Tissue Growth Factor: An Emerging Therapeutic Target in Rheumatoid Arthritis

(2010) Mario C. Rico et al.   Current Vascular Pharmacology

Rheumatoid arthritis

(2010) David L Scott et al.   LANCET

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Molecular signatures and new candidates to target the pathogenesis of rheumatoid arthritis

(2010) U. Ungethuem et al.   PHYSIOLOGICAL GENOMICS

The Gene Expression Profile in the Synovium as a Predictor of the Clinical Response to Infliximab Treatment in Rheumatoid Arthritis

(2010) Johan Lindberg et al.   PLoS One

Innate Immunity and Rheumatoid Arthritis

(2010) Angelica Gierut et al.   RHEUMATIC DISEASE CLINICS OF NORTH AMERICA

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Scara5 Is a Ferritin Receptor Mediating Non-Transferrin Iron Delivery

(2009) Jau Yi Li et al.   DEVELOPMENTAL CELL

Fibroblast-like synoviocytes: key effector cells in rheumatoid arthritis

(2009) Beatrix Bartok et al.   IMMUNOLOGICAL REVIEWS

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays

(2008) J. C. Marioni et al.   GENOME RESEARCH

Coagulation signalling following tissue injury: Focus on the role of factor Xa

(2008) M KRUPICZOJC et al.   INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

A Global View of Gene Activity and Alternative Splicing by Deep Sequencing of the Human Transcriptome

(2008) M. Sultan et al.   SCIENCE