FocusStack and StimServer: a new open source MATLAB toolchain for visual stimulation and analysis of two-photon calcium neuronal imaging data

Two-Photon Processor and SeNeCA: a freely available software package to process data from two-photon calcium imaging at speeds down to several milliseconds per frame

(2013) Jakub Tomek et al.   JOURNAL OF NEUROPHYSIOLOGY

HelioScan: A software framework for controlling in vivo microscopy setups with high hardware flexibility, functional diversity and extendibility

(2013) Dominik Langer et al.   JOURNAL OF NEUROSCIENCE METHODS

Ultrasensitive fluorescent proteins for imaging neuronal activity

(2013) Tsai-Wen Chen et al.   NATURE

Inference of neuronal network spike dynamics and topology from calcium imaging data

(2013) Henry Lütcke et al.   Frontiers in Neural Circuits

Distinct Functional Properties of Primary and Posteromedial Visual Area of Mouse Neocortex

(2012) M. M. Roth et al.   JOURNAL OF NEUROSCIENCE

NIH Image to ImageJ: 25 years of image analysis

(2012) Caroline A Schneider et al.   NATURE METHODS

Representation of visual scenes by local neuronal populations in layer 2/3 of mouse visual cortex

(2011) Björn Kampa   Frontiers in Neural Circuits

Fast Nonnegative Deconvolution for Spike Train Inference From Population Calcium Imaging

(2010) Joshua T. Vogelstein et al.   JOURNAL OF NEUROPHYSIOLOGY

High-speed in vivo calcium imaging reveals neuronal network activity with near-millisecond precision

(2010) Benjamin F Grewe et al.   NATURE METHODS

Efficient subpixel image registration algorithms

(2008) Manuel Guizar-Sicairos et al.   OPTICS LETTERS