DNA metabarcoding and morphological macroinvertebrate metrics reveal the same changes in boreal watersheds across an environmental gradient

Xenotransplantation 2.0

(2016)   NATURE BIOTECHNOLOGY

Development and application of benthic macroinvertebrate-based multimetric indices for the assessment of streams and rivers in the Taihu Basin, China

(2015) Qi Huang et al.   ECOLOGICAL INDICATORS

Hierarchical partitioning for selection of microbial and chemical indicators of soil quality

(2014) Simone Cristina Braga Bertini et al.   PEDOBIOLOGIA

Environmental Status Assessment Using DNA Metabarcoding: Towards a Genetics Based Marine Biotic Index (gAMBI)

(2014) Eva Aylagas et al.   PLoS One

Does DNA barcoding improve performance of traditional stream bioassessment metrics?

(2014) Eric D. Stein et al.   Freshwater Science

Cryptic biodiversity in streams: a comparison of macroinvertebrate communities based on morphological and DNA barcode identifications

(2014) John K. Jackson et al.   Freshwater Science

Taxonomic surrogacy, numerical resolution and responses of stream macroinvertebrate communities to ecological gradients: Are the inferences transferable among regions?

(2013) Jani Heino   ECOLOGICAL INDICATORS

Environmental monitoring using next generation sequencing: rapid identification of macroinvertebrate bioindicator species

(2013) Melissa E Carew et al.   Frontiers in Zoology

Fungal community analysis by high-throughput sequencing of amplified markers - a user's guide

(2013) Björn D. Lindahl et al.   NEW PHYTOLOGIST

Biomonitoring 2.0: a new paradigm in ecosystem assessment made possible by next-generation DNA sequencing

(2012) DONALD J. BAIRD et al.   MOLECULAR ECOLOGY

Sequencing our way towards understanding global eukaryotic biodiversity

(2012) Holly M. Bik et al.   TRENDS IN ECOLOGY & EVOLUTION

Assessing biodiversity of a freshwater benthic macroinvertebrate community through non-destructive environmental barcoding of DNA from preservative ethanol

(2012) Mehrdad Hajibabaei et al.   BMC ECOLOGY

Freshwater biodiversity at regional extent: determinants of macroinvertebrate taxonomic richness in headwater streams

(2011) Anna Astorga et al.   ECOGRAPHY

Effects of Watershed History on Dissolved Organic Matter Characteristics in Headwater Streams

(2011) Youhei Yamashita et al.   ECOSYSTEMS

Can DNA barcodes of stream macroinvertebrates improve descriptions of community structure and water quality?

(2011) Bernard W. Sweeney et al.   JOURNAL OF THE NORTH AMERICAN BENTHOLOGICAL SOCIETY

Who is eating what: diet assessment using next generation sequencing

(2011) FRANCOIS POMPANON et al.   MOLECULAR ECOLOGY

Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications

(2011) Pelin Yilmaz et al.   NATURE BIOTECHNOLOGY

Towards standardization of the description and publication of next-generation sequencing datasets of fungal communities

(2011) R. Henrik Nilsson et al.   NEW PHYTOLOGIST

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Quantifying microbial communities with 454 pyrosequencing: does read abundance count?

(2010) ANTHONY S. AMEND et al.   MOLECULAR ECOLOGY

Logging impacts on the biogeochemistry of boreal forest soils and nutrient export to aquatic systems: A review

(2009) David P. Kreutzweiser et al.   ENVIRONMENTAL REVIEWS

Fluorescence characteristics and biodegradability of dissolved organic matter in forest and wetland soils from coastal temperate watersheds in southeast Alaska

(2008) Jason B. Fellman et al.   BIOGEOCHEMISTRY

Ecological integrity of upper Warri River, Niger Delta using aquatic insects as bioindicators

(2008) Francis O. Arimoro et al.   ECOLOGICAL INDICATORS

Leaf-litter decomposition and macroinvertebrate communities in boreal forest streams linked to upland logging disturbance

(2007) David P. Kreutzweiser et al.   JOURNAL OF THE NORTH AMERICAN BENTHOLOGICAL SOCIETY