Genome-wide identification and co-expression network analysis provide insights into the roles of auxin response factor gene family in chickpea

Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape

(2016) Ronan C. O’Malley et al.   CELL

Genome-wide characterization and expression pattern of auxin response factor (ARF) gene family in soybean and common bean

(2016) Bao Le et al.   Genes & Genomics

Auxin response factors

(2016) John William Chandler   PLANT CELL AND ENVIRONMENT

Regulations on growth and development in tomato cotyledon, flower and fruit via destruction of miR396 with short tandem target mimic

(2016) Dongyan Cao et al.   PLANT SCIENCE

Defining a Two-pronged Structural Model for PB1 (Phox/Bem1p) Domain Interaction in Plant Auxin Responses

(2015) David A. Korasick et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

MicroRNAs in Control of Plant Development

(2015) Chao Li et al.   JOURNAL OF CELLULAR PHYSIOLOGY

The expanding world of small RNAs in plants

(2015) Filipe Borges et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

PlantPAN 2.0: an update of plant promoter analysis navigator for reconstructing transcriptional regulatory networks in plants

(2015) Chi-Nga Chow et al.   NUCLEIC ACIDS RESEARCH

The PB1 Domain in Auxin Response Factor and Aux/IAA Proteins: A Versatile Protein Interaction Module in the Auxin Response

(2015) Tom J. Guilfoyle   PLANT CELL

High throughput sequencing of small RNA component of leaves and inflorescence revealed conserved and novel miRNAs as well as phasiRNA loci in chickpea

(2015) Sangeeta Srivastava et al.   PLANT SCIENCE

Genome-wide analysis and expression profiling suggest diverse roles of GH3 genes during development and abiotic stress responses in legumes

(2015) Vikash K. Singh et al.   Frontiers in Plant Science

Structural Basis for DNA Binding Specificity by the Auxin-Dependent ARF Transcription Factors

(2014) D. Roeland Boer et al.   CELL

Genome-wide discovery and differential regulation of conserved and novel microRNAs in chickpea via deep sequencing

(2014) Mukesh Jain et al.   JOURNAL OF EXPERIMENTAL BOTANY

AUXIN RESPONSE FACTOR 3integrates the functions ofAGAMOUSandAPETALA2in floral meristem determinacy

(2014) Xigang Liu et al.   PLANT JOURNAL

Genome-Scale Transcriptomic Insights into Molecular Aspects of Abiotic Stress Responses in Chickpea

(2014) Rohini Garg et al.   PLANT MOLECULAR BIOLOGY REPORTER

Molecular basis for AUXIN RESPONSE FACTOR protein interaction and the control of auxin response repression

(2014) D. A. Korasick et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Structural basis for oligomerization of auxin transcriptional regulators

(2014) Max H. Nanao et al.   Nature Communications

Protein-protein interaction and gene co-expression maps of ARFs and Aux/IAAs in Arabidopsis

(2014) Sarbottam Piya et al.   Frontiers in Plant Science

Auxin metabolism and homeostasis during plant development

(2013) K. Ljung   DEVELOPMENT

Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement

(2013) Rajeev K Varshney et al.   NATURE BIOTECHNOLOGY

A global view of transcriptome dynamics during flower development in chickpea by deep sequencing

(2013) Vikash K. Singh et al.   PLANT BIOTECHNOLOGY JOURNAL

A draft genome sequence of the pulse crop chickpea (Cicer arietinum L.)

(2013) Mukesh Jain et al.   PLANT JOURNAL

ETTIN (ARF3) physically interacts with KANADI proteins to form a functional complex essential for integument development and polarity determination in Arabidopsis

(2012) D. R. Kelley et al.   DEVELOPMENT

Evolution of the ARF Gene Family in Land Plants: Old Domains, New Tricks

(2012) Cédric Finet et al.   MOLECULAR BIOLOGY AND EVOLUTION

OsARF16, a transcription factor, is required for auxin and phosphate starvation response in rice (Oryza sativaL.)

(2012) CHENJIA SHEN et al.   PLANT CELL AND ENVIRONMENT

Getting a grasp on domain III/IV responsible for Auxin Response Factor–IAA protein interactions

(2012) Tom J. Guilfoyle et al.   PLANT SCIENCE

Genome-wide identification and expression profiling of auxin response factor (ARF) gene family in maize

(2011) Hongyan Xing et al.   BMC GENOMICS

Genome-wide analysis of auxin response factor (ARF) gene family from tomato and analysis of their role in flower and fruit development

(2011) Rahul Kumar et al.   MOLECULAR GENETICS AND GENOMICS

A cellular expression map of the Arabidopsis AUXIN RESPONSE FACTOR gene family

(2011) Eike H. Rademacher et al.   PLANT JOURNAL

Auxin Biosynthesis and Its Role in Plant Development

(2010) Yunde Zhao   Annual Review of Plant Biology

Validation of internal control genes for quantitative gene expression studies in chickpea (Cicer arietinum L.)

(2010) Rohini Garg et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Positive selection neighboring functionally essential sites and disease-implicated regions of mammalian reproductive proteins

(2010) Claire C Morgan et al.   BMC EVOLUTIONARY BIOLOGY

Unraveling the paradoxes of plant hormone signaling integration

(2010) Yvon Jaillais et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

MicroRNA Gene Evolution inArabidopsis lyrataandArabidopsis thaliana

(2010) Noah Fahlgren et al.   PLANT CELL

miR390,Arabidopsis TAS3tasiRNAs, and TheirAUXIN RESPONSE FACTORTargets Define an Autoregulatory Network Quantitatively Regulating Lateral Root Growth

(2010) Elena Marin et al.   PLANT CELL

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

VisANT: an integrative framework for networks in systems biology

(2008) Z. Hu et al.   BRIEFINGS IN BIOINFORMATICS