Comprehensive transcriptome profiling of Salvia miltiorrhiza for discovery of genes associated with the biosynthesis of tanshinones and phenolic acids

Enhanced Diterpene Tanshinone Accumulation and Bioactivity of Transgenic Salvia miltiorrhiza Hairy Roots by Pathway Engineering

(2016) Min Shi et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Molecular cloning and characterization of two 1-deoxy-d-xylulose-5-phosphate synthase genes involved in tanshinone biosynthesis in Salvia miltiorrhiza

(2016) Wei Zhou et al.   MOLECULAR BREEDING

Analysis of the Genome Sequence of the Medicinal Plant Salvia miltiorrhiza

(2016) Haibin Xu et al.   Molecular Plant

Mapping of Ppd-B1, a Major Candidate Gene for Late Heading on Wild Emmer Chromosome Arm 2BS and Assessment of Its Interactions with Early Heading QTLs on 3AL

(2016) Wei Zhou et al.   PLoS One

Elucidation of the biosynthesis of carnosic acid and its reconstitution in yeast

(2016) Ulschan Scheler et al.   Nature Communications

Methyl jasmonate induction of tanshinone biosynthesis in Salvia miltiorrhiza hairy roots is mediated by JASMONATE ZIM-DOMAIN repressor proteins

(2016) Min Shi et al.   Scientific Reports

Spectroscopic and computational characterization of laccases and their substrate radical intermediates

(2015) Rebecca Pogni et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Identification of candidate flavonoid pathway genes using transcriptome correlation network analysis in ripe strawberry (Fragaria×ananassa) fruits

(2015) Jeremy Pillet et al.   JOURNAL OF EXPERIMENTAL BOTANY

Cytochrome P450 promiscuity leads to a bifurcating biosynthetic pathway for tanshinones

(2015) Juan Guo et al.   NEW PHYTOLOGIST

Effects of methyl jasmonate and salicylic acid on tanshinone production and biosynthetic gene expression in transgenicSalvia miltiorrhizahairy roots

(2014) Xiaolong Hao et al.   BIOTECHNOLOGY AND APPLIED BIOCHEMISTRY

Combining metabolomics and transcriptomics to characterize tanshinone biosynthesis in Salvia miltiorrhiza

(2014) Wei Gao et al.   BMC GENOMICS

Transcriptional data mining ofSalvia miltiorrhizain response to methyl jasmonate to examine the mechanism of bioactive compound biosynthesis and regulation

(2014) Hongmei Luo et al.   PHYSIOLOGIA PLANTARUM

Transcriptome Analysis by Illumina High-Throughout Paired-End Sequencing Reveals the Complexity of Differential Gene Expression during In Vitro Plantlet Growth and Flowering in Amaranthus tricolor L.

(2014) Shengcai Liu et al.   PLoS One

Computational Identification and Systematic Classification of Novel Cytochrome P450 Genes in Salvia miltiorrhiza

(2014) Haimei Chen et al.   PLoS One

13C Tracer Reveals Phenolic Acids Biosynthesis in Hairy Root Cultures of Salvia miltiorrhiza

(2013) Peng Di et al.   ACS Chemical Biology

Employing heat maps to mine associations in structured routine care data

(2013) Dennis Toddenroth et al.   ARTIFICIAL INTELLIGENCE IN MEDICINE

Transcriptome analysis of Cymbidium sinense and its application to the identification of genes associated with floral development

(2013) Jianxia Zhang et al.   BMC GENOMICS

Transcriptome Analysis of Medicinal Plant Salvia miltiorrhiza and Identification of Genes Related to Tanshinone Biosynthesis

(2013) Lei Yang et al.   PLoS One

Biochemical analysis of a multifunctional cytochrome P450 (CYP51) enzyme required for synthesis of antimicrobial triterpenes in plants

(2013) K. Geisler et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

CYP76AH1 catalyzes turnover of miltiradiene in tanshinones biosynthesis and enables heterologous production of ferruginol in yeasts

(2013) J. Guo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Molecular mechanism of elicitor-induced tanshinone accumulation in Salvia miltiorrhiza hairy root cultures

(2012) Guoyin Kai et al.   ACTA PHYSIOLOGIAE PLANTARUM

Transcriptional Regulation of Plant Secondary MetabolismF

(2012) Chang-Qing Yang et al.   Journal of Integrative Plant Biology

Cross-genera transferable e-microsatellite markers for 12 genera of the Lamiaceae family

(2012) Mehmet Karaca et al.   JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE

De Novo Sequencing and Characterization of the Floral Transcriptome of Dendrocalamus latiflorus (Poaceae: Bambusoideae)

(2012) Xue-Mei Zhang et al.   PLoS One

Parsing a multifunctional biosynthetic gene cluster from rice: Biochemical characterization of CYP71Z6 & 7

(2011) Yisheng Wu et al.   FEBS LETTERS

De novo transcriptome sequencing in Salvia miltiorrhiza to identify genes involved in the biosynthesis of active ingredients

(2011) Hua Wenping et al.   GENOMICS

Metabolic engineering tanshinone biosynthetic pathway in Salvia miltiorrhiza hairy root cultures

(2011) Guoyin Kai et al.   METABOLIC ENGINEERING

The Jasmonate-Responsive AP2/ERF Transcription Factors AaERF1 and AaERF2 Positively Regulate Artemisinin Biosynthesis in Artemisia annua L.

(2011) Zong-Xia Yu et al.   Molecular Plant

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

The basic helix-loop-helix transcription factor CrMYC2 controls the jasmonate-responsive expression of the ORCA genes that regulate alkaloid biosynthesis in Catharanthus roseus

(2011) Hongtao Zhang et al.   PLANT JOURNAL

Whole genome co-expression analysis of soybean cytochrome P450 genes identifies nodulation-specific P450 monooxygenases

(2010) Satish K Guttikonda et al.   BMC PLANT BIOLOGY

Cloning and characterization of a novel 3-hydroxy-3-methylglutaryl coenzyme A reductase gene from Salvia miltiorrhiza involved in diterpenoid tanshinone accumulation

(2010) Zhubo Dai et al.   JOURNAL OF PLANT PHYSIOLOGY

Generation and analysis of expressed sequence tags from the medicinal plant Salvia miltiorrhiza

(2010) YaPing Yan et al.   Science China-Life Sciences

A Functional Genomics Approach to Tanshinone Biosynthesis Provides Stereochemical Insights

(2009) Wei Gao et al.   ORGANIC LETTERS

Methyl jasmonate dramatically enhances the accumulation of phenolic acids inSalvia miltiorrhizahairy root cultures

(2009) Ying Xiao et al.   PHYSIOLOGIA PLANTARUM

CYP76M7 Is an ent-Cassadiene C11 -Hydroxylase Defining a Second Multifunctional Diterpenoid Biosynthetic Gene Cluster in Rice

(2009) S. Swaminathan et al.   PLANT CELL

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

Molecular cloning, expression and characterization of a phenylalanine ammonia-lyase gene (SmPAL1) from Salvia miltiorrhiza

(2008) Jie Song et al.   MOLECULAR BIOLOGY REPORTS

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

Decoding genes with coexpression networks and metabolomics – ‘majority report by precogs’

(2007) Kazuki Saito et al.   TRENDS IN PLANT SCIENCE