Inclusion of Population-specific Reference Panel from India to the 1000 Genomes Phase 3 Panel Improves Imputation Accuracy

A reference panel of 64,976 haplotypes for genotype imputation

(2016)   NATURE GENETICS

Genomic reconstruction of the history of extant populations of India reveals five distinct ancestral components and a complex structure

(2016) Analabha Basu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome-wide association studies in the Japanese population identify seven novel loci for type 2 diabetes

(2016) Minako Imamura et al.   Nature Communications

Rare and Common Genetic Events in Type 2 Diabetes: What Should Biologists Know?

(2015) Amélie Bonnefond et al.   Cell Metabolism

Evaluation of transethnic fine mapping with population-specific and cosmopolitan imputation reference panels in diverse Asian populations

(2015) Xu Wang et al.   EUROPEAN JOURNAL OF HUMAN GENETICS

A global reference for human genetic variation

(2015) Richard A. Gibbs et al.   NATURE

Construction of a population-specific HLA imputation reference panel and its application to Graves' disease risk in Japanese

(2015) Yukinori Okada et al.   NATURE GENETICS

Genome-wide association analyses based on whole-genome sequencing in Sardinia provide insights into regulation of hemoglobin levels

(2015) Fabrice Danjou et al.   NATURE GENETICS

Population-specific genotype imputations using minimac or IMPUTE2

(2015) Elisabeth M van Leeuwen et al.   Nature Protocols

Improved imputation of low-frequency and rare variants using the UK10K haplotype reference panel

(2015) Jie Huang et al.   Nature Communications

Rare variant discovery by deep whole-genome sequencing of 1,070 Japanese individuals

(2015) Masao Nagasaki et al.   Nature Communications

When Does Choice of Accuracy Measure Alter Imputation Accuracy Assessments?

(2015) Shelina Ramnarine et al.   PLoS One

Improved imputation quality of low-frequency and rare variants in European samples using the ‘Genome of The Netherlands’

(2014) Patrick Deelen et al.   EUROPEAN JOURNAL OF HUMAN GENETICS

A common Greenlandic TBC1D4 variant confers muscle insulin resistance and type 2 diabetes

(2014) Ida Moltke et al.   NATURE

A Genome-Wide Association Study RevealsARL15, a Novel Non-HLA Susceptibility Gene for Rheumatoid Arthritis in North Indians

(2013) Sapna Negi et al.   ARTHRITIS AND RHEUMATISM

Assessment of Genotype Imputation Performance Using 1000 Genomes in African American Studies

(2012) Dana B. Hancock et al.   PLoS One

Shared and Unique Components of Human Population Structure and Genome-Wide Signals of Positive Selection in South Asia

(2011) Mait Metspalu et al.   AMERICAN JOURNAL OF HUMAN GENETICS

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

The Human Genetic History of South Asia

(2010) Partha P. Majumder   CURRENT BIOLOGY

Integrating common and rare genetic variation in diverse human populations

(2010)   NATURE

Genotype imputation for genome-wide association studies

(2010) Jonathan Marchini et al.   NATURE REVIEWS GENETICS

Genomewide Association Studies and Assessment of the Risk of Disease

(2010) Teri A. Manolio   NEW ENGLAND JOURNAL OF MEDICINE

A New Statistic to Evaluate Imputation Reliability

(2010) Peng Lin et al.   PLoS One

Modeling microbial survival in buildup biofilm for complex medical devices

(2009) Michelle J Alfa et al.   BMC INFECTIOUS DISEASES

Reconstructing Indian population history

(2009) David Reich et al.   NATURE

A Flexible and Accurate Genotype Imputation Method for the Next Generation of Genome-Wide Association Studies

(2009) Bryan N. Howie et al.   PLoS Genetics

Genetic landscape of the people of India: a canvas for disease gene exploration

(2008)   JOURNAL OF GENETICS

Worldwide Human Relationships Inferred from Genome-Wide Patterns of Variation

(2008) J. Z. Li et al.   SCIENCE