Molecular insights into photosynthesis and carbohydrate metabolism in Jatropha curcas grown under elevated CO2 using transcriptome sequencing and assembly

NDH-1 and NDH-2 Plastoquinone Reductases in Oxygenic Photosynthesis

(2016) Gilles Peltier et al.   Annual Review of Plant Biology

Crop responses to elevated CO2 and interactions with H2O, N, and temperature

(2016) Bruce A Kimball   CURRENT OPINION IN PLANT BIOLOGY

Unravelling molecular mechanisms from floral initiation to lipid biosynthesis in a promising biofuel tree species, Pongamia pinnata using transcriptome analysis

(2016) Rachapudi V. Sreeharsha et al.   Scientific Reports

Physiological and Transcriptome Responses to Combinations of Elevated CO2 and Magnesium in Arabidopsis thaliana

(2016) Yaofang Niu et al.   PLoS One

Enhancement of photosynthetic capacity in Euglena gracilis by expression of cyanobacterial fructose-1,6-/sedoheptulose-1,7-bisphosphatase leads to increases in biomass and wax ester production

(2015) Takahisa Ogawa et al.   Biotechnology for Biofuels

Transcriptomics and physiological analyses reveal co-ordinated alteration of metabolic pathways inJatropha curcasdrought tolerance

(2015) Helena Sapeta et al.   JOURNAL OF EXPERIMENTAL BOTANY

Integrated genome sequence and linkage map of physic nut (Jatropha curcasL.), a biodiesel plant

(2015) Pingzhi Wu et al.   PLANT JOURNAL

Photosystem I cyclic electron flow via chloroplast NADH dehydrogenase-like complex performs a physiological role for photosynthesis at low light

(2015) Wataru Yamori et al.   Scientific Reports

Loss of the two major leaf isoforms of sucrose-phosphate synthase in Arabidopsis thaliana limits sucrose synthesis and nocturnal starch degradation but does not alter carbon partitioning during photosynthesis

(2014) Kathrin Volkert et al.   JOURNAL OF EXPERIMENTAL BOTANY

Persistent stimulation of photosynthesis in short rotation coppice mulberry under elevated CO2 atmosphere

(2014) Kalva Madhana Sekhar et al.   JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY B-BIOLOGY

Global Analysis of Gene Expression Profiles in Physic Nut (Jatropha curcas L.) Seedlings Exposed to Salt Stress

(2014) Lin Zhang et al.   PLoS One

Elucidation of the molecular responses to waterlogging in Jatropha roots by transcriptome profiling

(2014) Piyada Juntawong et al.   Frontiers in Plant Science

Influence of salicylic acid on rubisco and rubisco activase in tobacco plant grown under sodium chloride in vitro

(2014) So Young Lee et al.   SAUDI JOURNAL OF BIOLOGICAL SCIENCES

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

(2013) Y. Liao et al.   BIOINFORMATICS

Jatropha curcas, a biofuel crop: Functional genomics for understanding metabolic pathways and genetic improvement

(2013) Fatemeh Maghuly et al.   Biotechnology Journal

Substantial roles of hexokinase and fructokinase in the effects of sugars on plant physiology and development

(2013) David Granot et al.   JOURNAL OF EXPERIMENTAL BOTANY

PlantTFDB 3.0: a portal for the functional and evolutionary study of plant transcription factors

(2013) Jinpu Jin et al.   NUCLEIC ACIDS RESEARCH

The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote

(2013) Yang Liao et al.   NUCLEIC ACIDS RESEARCH

De Novo Transcriptome Assembly (NGS) of Curcuma longa L. Rhizome Reveals Novel Transcripts Related to Anticancer and Antimalarial Terpenoids

(2013) Ramasamy S. Annadurai et al.   PLoS One

Global Analysis of Transcriptome Responses and Gene Expression Profiles to Cold Stress of Jatropha curcas L.

(2013) Haibo Wang et al.   PLoS One

Source-to-sink transport of sugar and regulation by environmental factors

(2013) Remi Lemoine et al.   Frontiers in Plant Science

Analysis of Jatropha curcas transcriptome for oil enhancement and genic markers

(2013) Atul Grover et al.   PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS

Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels

(2012) Marcel H. Schulz et al.   BIOINFORMATICS

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

Photosynthetic control of electron transport and the regulation of gene expression

(2012) Christine H. Foyer et al.   JOURNAL OF EXPERIMENTAL BOTANY

Global transcriptomic profiling of aspen trees under elevated [CO2] to identify potential molecular mechanisms responsible for enhanced radial growth

(2012) Hairong Wei et al.   JOURNAL OF PLANT RESEARCH

Global Analysis of Gene Expression Profiles in Developing Physic Nut (Jatropha curcas L.) Seeds

(2012) Huawu Jiang et al.   PLoS One

The role of transporters in supplying energy to plant plastids

(2011) U.-I. Flugge et al.   JOURNAL OF EXPERIMENTAL BOTANY

Regulation of starch metabolism: the age of enlightenment?

(2010) Oliver Kötting et al.   CURRENT OPINION IN PLANT BIOLOGY

Sequence Analysis of the Genome of an Oil-Bearing Tree, Jatropha curcas L.

(2010) S. Sato et al.   DNA RESEARCH

The transcriptome of Populus in elevated CO2 reveals increased anthocyanin biosynthesis during delayed autumnal senescence

(2010) M. J. Tallis et al.   NEW PHYTOLOGIST

The Roles of ATP Synthase and the Cytochrome b6/f Complexes in Limiting Chloroplast Electron Transport and Determining Photosynthetic Capacity

(2010) W. Yamori et al.   PLANT PHYSIOLOGY

Deficiency in a cytosolic ribose-5-phosphate isomerase causes chloroplast dysfunction, late flowering and premature cell death inArabidopsis

(2009) Yuqing Xiong et al.   PHYSIOLOGIA PLANTARUM

Genomic basis for stimulated respiration by plants growing under elevated carbon dioxide

(2009) A. D. B. Leakey et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Effects of elevated CO2 on the tolerance of photosynthesis to acute heat stress in C3 , C4 , and CAM species

(2008) Dan Wang et al.   AMERICAN JOURNAL OF BOTANY

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Gene expression profiling: opening the black box of plant ecosystem responses to global change

(2008) ANDREW D. B. LEAKEY et al.   GLOBAL CHANGE BIOLOGY

An evaluation of multipurpose oil seed crop for industrial uses (Jatropha curcas L.): A review

(2008) Ashwani Kumar et al.   INDUSTRIAL CROPS AND PRODUCTS