Comparative genomics and transcriptome analysis of Aspergillus niger and metabolic engineering for citrate production

Metabolic engineering in the biotechnological production of organic acids in the tricarboxylic acid cycle of microorganisms: Advances and prospects

(2015) Xian Yin et al.   BIOTECHNOLOGY ADVANCES

Candida albicans cell shaving uncovers new proteins involved in cell wall integrity, yeast to hypha transition, stress response and host–pathogen interaction

(2015) Ana Gil-Bona et al.   Journal of Proteomics

An evaluation of the PacBio RS platform for sequencing and de novo assembly of a chloroplast genome

(2013) Marco Ferrarini et al.   BMC GENOMICS

Linkage of Oxidative Stress and Mitochondrial Dysfunctions to Spontaneous Culture Degeneration inAspergillus nidulans

(2013) Lin Li et al.   MOLECULAR & CELLULAR PROTEOMICS

Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data

(2013) Chen-Shan Chin et al.   NATURE METHODS

Development in Aspergillus

(2013) P. Krijgsheld et al.   STUDIES IN MYCOLOGY

Heterogeneity in liquid shaken cultures of Aspergillus niger inoculated with melanised conidia or conidia of pigmentation mutants

(2013) G.J. van Veluw et al.   STUDIES IN MYCOLOGY

Six novel constitutive promoters for metabolic engineering of Aspergillus niger

(2012) Marzena Blumhoff et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory

(2012) Mark J Chaisson et al.   BMC BIOINFORMATICS

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

Comparative genomics of citric-acid-producing Aspergillus niger ATCC 1015 versus enzyme-producing CBS 513.88

(2011) M. R. Andersen et al.   GENOME RESEARCH

Tasting the fungal cell wall

(2010) Jean-Paul Latgé   CELLULAR MICROBIOLOGY

Cell wall α1-3glucans induce the aggregation of germinating conidia of Aspergillus fumigatus

(2010) Thierry Fontaine et al.   FUNGAL GENETICS AND BIOLOGY

Cell wall glucan synthases and GTPases inParacoccidioides brasiliensis

(2010) Françoise Sorais et al.   MEDICAL MYCOLOGY

Characteristic properties of metabolism of the yeast Yarrowia lipolytica during the synthesis of α-ketoglutaric acid from ethanol

(2010) A. P. Ilchenko et al.   MICROBIOLOGY

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

A Broad Distribution of the Alternative Oxidase in Microsporidian Parasites

(2010) Bryony A. P. Williams et al.   PLoS Pathogens

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Systemic analysis of the response of Aspergillus niger to ambient pH

(2009) Mikael R Andersen et al.   GENOME BIOLOGY

Aggressive assembly of pyrosequencing reads with mates

(2008) Jason R. Miller et al.   BIOINFORMATICS

Metabolic model integration of the bibliome, genome, metabolome and reactome of Aspergillus niger

(2008) Mikael Rørdam Andersen et al.   Molecular Systems Biology

Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments

(2008) Brian J Haas et al.   GENOME BIOLOGY