Microbiota composition of simultaneously colonized mice housed under either a gnotobiotic isolator or individually ventilated cage regime

The structural alteration of gut microbiota in low-birth-weight mice undergoing accelerated postnatal growth

(2016) Jingjing Wang et al.   Scientific Reports

A Review of Applied Aspects of Dealing with Gut Microbiota Impact on Rodent Models

(2015) Axel Kornerup Hansen et al.   ILAR JOURNAL

A catalog of the mouse gut metagenome

(2015) Liang Xiao et al.   NATURE BIOTECHNOLOGY

Effects of Vendor and Genetic Background on the Composition of the Fecal Microbiota of Inbred Mice

(2015) Aaron C. Ericsson et al.   PLoS One

Chlorinated Water Modulates the Development of Colorectal Tumors with Chromosomal Instability and Gut Microbiota in Apc-Deficient Mice

(2015) Tatsunari Sasada et al.   PLoS One

Variation in Taxonomic Composition of the Fecal Microbiota in an Inbred Mouse Strain across Individuals and Time

(2015) Yana Emmy Hoy et al.   PLoS One

The composition of the gut microbiota shapes the colon mucus barrier

(2014) H. E. Jakobsson et al.   EMBO REPORTS

Consumption of Acidic Water Alters the Gut Microbiome and Decreases the Risk of Diabetes in NOD Mice

(2014) Kyle J. Wolf et al.   JOURNAL OF HISTOCHEMISTRY & CYTOCHEMISTRY

Data analysis for 16S microbial profiling from different benchtop sequencing platforms

(2014) Victor S. Pylro et al.   JOURNAL OF MICROBIOLOGICAL METHODS

A simple cage-autonomous method for the maintenance of the barrier status of germ-free mice during experimentation

(2014) G Hecht et al.   LABORATORY ANIMALS

The microbiota regulates susceptibility to Fas-mediated acute hepatic injury

(2014) Stela Celaj et al.   LABORATORY INVESTIGATION

Standardised animal models of host microbial mutualism

(2014) A J Macpherson et al.   Mucosal Immunology

Composition of Intestinal Microbiota in Immune-Deficient Mice Kept in Three Different Housing Conditions

(2014) Christa Thoene-Reineke et al.   PLoS One

Characterization of the gut microbiota in leptin deficient obese mice – Correlation to inflammatory and diabetic parameters

(2014) M. Ellekilde et al.   RESEARCH IN VETERINARY SCIENCE

Effects of Age and Strain on the Microbiota Colonization in an Infant Human Flora-Associated Mouse Model

(2013) Benhua Zeng et al.   CURRENT MICROBIOLOGY

pH of Drinking Water Influences the Composition of Gut Microbiome and Type 1 Diabetes Incidence

(2013) M. H. Sofi et al.   DIABETES

Biphasic assembly of the murine intestinal microbiota during early development

(2013) Ida Gisela Pantoja-Feliciano et al.   ISME Journal

Stochastic changes over time and not founder effects drive cage effects in microbial community assembly in a mouse model

(2013) Jonathan McCafferty et al.   ISME Journal

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Quantitatively Different, yet Qualitatively Alike: A Meta-Analysis of the Mouse Core Gut Microbiome with a View towards the Human Gut Microbiome

(2013) Lukasz Krych et al.   PLoS One

EMPeror: a tool for visualizing high-throughput microbial community data

(2013) Yoshiki Vázquez-Baeza et al.   GigaScience

‘Candidatus Arthromitus’ revised: segmented filamentous bacteria in arthropod guts are members of Lachnospiraceae

(2012) Claire L. Thompson et al.   ENVIRONMENTAL MICROBIOLOGY

Immune-modulating gut symbionts are not “Candidatus Arthromitus”

(2012) C L Thompson et al.   Mucosal Immunology

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Patterns of Early Gut Colonization Shape Future Immune Responses of the Host

(2012) Camilla Hartmann Friis Hansen et al.   PLoS One

Gut Microbiota Composition Is Correlated to Grid Floor Induced Stress and Behavior in the BALB/c Mouse

(2012) Katja Maria Bangsgaard Bendtsen et al.   PLoS One

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Site and Strain-Specific Variation in Gut Microbiota Profiles and Metabolism in Experimental Mice

(2010) Melissa K. Friswell et al.   PLoS One

Induction of Intestinal Th17 Cells by Segmented Filamentous Bacteria

(2009) Ivaylo I. Ivanov et al.   CELL

The Effect of Diet on the Human Gut Microbiome: A Metagenomic Analysis in Humanized Gnotobiotic Mice

(2009) P. J. Turnbaugh et al.   Science Translational Medicine