Identification of BnaYUCCA6 as a candidate gene for branch angle in Brassica napus by QTL-seq

Characterization and fine mapping of a novel barley Stage Green-Revertible Albino Gene (HvSGRA) by Bulked Segregant Analysis based on SSR assay and Specific Length Amplified Fragment Sequencing

(2015) Dandan Qin et al.   BMC GENOMICS

Harnessing Genetic Variation in Leaf Angle to Increase Productivity of Sorghum bicolor

(2015) S. K. Truong et al.   GENETICS

QTL mapping of cucumber fruit flesh thickness by SLAF-seq

(2015) Xuewen Xu et al.   Scientific Reports

The yield of mechanically harvested rapeseed (Brassica napus L.) can be increased by optimum plant density and row spacing

(2015) Jie Kuai et al.   Scientific Reports

Sub-genomic selection patterns as a signature of breeding in the allopolyploid Brassica napus genome

(2015) Lunwen Qian et al.   BMC GENOMICS

A combined linkage and regional association mapping validation and fine mapping of two major pleiotropic QTLs for seed weight and silique length in rapeseed (Brassica napus L.)

(2014) Na Li et al.   BMC PLANT BIOLOGY

Natural variation and genetic analysis of the tiller angle gene MsTAC1 in Miscanthus sinensis

(2014) Hua Zhao et al.   PLANTA

Genome-Wide Delineation of Natural Variation for Pod Shatter Resistance in Brassica napus

(2014) Harsh Raman et al.   PLoS One

Strigolactones regulate rice tiller angle by attenuating shoot gravitropism through inhibiting auxin biosynthesis

(2014) D. Sang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome

(2014) B. Chalhoub et al.   SCIENCE

QTL-seq identifies an early flowering QTL located near Flowering Locus T in cucumber

(2014) Hongfeng Lu et al.   THEORETICAL AND APPLIED GENETICS

Survey of Plant Density Tolerance in U.S. Maize Germplasm

(2013) Brian D. Mansfield et al.   CROP SCIENCE

Auxin Controls Gravitropic Setpoint Angle in Higher Plant Lateral Branches

(2013) Suruchi Roychoudhry et al.   CURRENT BIOLOGY

Tillering and panicle branching genes in rice

(2013) Wei-hong Liang et al.   GENE

PpeTAC1 promotes the horizontal growth of branches in peach trees and is a member of a functionally conserved gene family found in diverse plants species

(2013) Chris Dardick et al.   PLANT JOURNAL

QTL-seq: rapid mapping of quantitative trait loci in rice by whole genome resequencing of DNA from two bulked populations

(2013) Hiroki Takagi et al.   PLANT JOURNAL

AtLAZY1 is a signaling component required for gravitropism of theArabidopsis thalianainflorescence

(2013) Takeshi Yoshihara et al.   PLANT JOURNAL

Mapping of Quantitative Trait Loci Underlying Cold Tolerance in Rice Seedlings via High-Throughput Sequencing of Pooled Extremes

(2013) Zemao Yang et al.   PLoS One

The Arabidopsis IDD14, IDD15, and IDD16 Cooperatively Regulate Lateral Organ Morphogenesis and Gravitropism by Promoting Auxin Biosynthesis and Transport

(2013) Dayong Cui et al.   PLoS Genetics

Combining SNP discovery from next-generation sequencing data with bulked segregant analysis (BSA) to fine-map genes in polyploid wheat

(2012) Martin Trick et al.   BMC PLANT BIOLOGY

Overexpression of Arabidopsis YUCCA6 in Potato Results in High-Auxin Developmental Phenotypes and Enhanced Resistance to Water Deficit

(2012) Jeong Im Kim et al.   Molecular Plant

Genome sequencing reveals agronomically important loci in rice using MutMap

(2012) Akira Abe et al.   NATURE BIOTECHNOLOGY

Loose Plant Architecture1, an INDETERMINATE DOMAIN Protein Involved in Shoot Gravitropism, Regulates Plant Architecture in Rice

(2012) X. Wu et al.   PLANT PHYSIOLOGY

Discovery of Pod Shatter-Resistant Associated SNPs by Deep Sequencing of a Representative Library Followed by Bulk Segregant Analysis in Rapeseed

(2012) Zhiyong Hu et al.   PLoS One

Auxin–Cytokinin Interaction Regulates Meristem Development

(2011) Ying-Hua Su et al.   Molecular Plant

Auxin Biosynthesis: A Simple Two-Step Pathway Converts Tryptophan to Indole-3-Acetic Acid in Plants

(2011) Yunde Zhao   Molecular Plant

Genome-wide association study of leaf architecture in the maize nested association mapping population

(2011) Feng Tian et al.   NATURE GENETICS

Simultaneous Analysis of Multiple Endogenous Plant Hormones in Leaf Tissue of Oilseed Rape by Solid-phase Extraction Coupled with High-performance Liquid Chromatography-Electrospray Ionisation Tandem Mass Spectrometry

(2011) Yan-hua Li et al.   PHYTOCHEMICAL ANALYSIS

Over-expression of OsPIN2 leads to increased tiller numbers, angle and shorter plant height through suppression of OsLAZY1

(2011) Yingnan Chen et al.   PLANT BIOTECHNOLOGY JOURNAL

TheArabidopsisYUCCA1 Flavin Monooxygenase Functions in the Indole-3-Pyruvic Acid Branch of Auxin Biosynthesis

(2011) Anna N. Stepanova et al.   PLANT CELL

Cloning and Characterization of a Putative TAC1 Ortholog Associated with Leaf Angle in Maize (Zea mays L.)

(2011) Lixia Ku et al.   PLoS One

Conversion of tryptophan to indole-3-acetic acid by TRYPTOPHAN AMINOTRANSFERASES OF ARABIDOPSIS and YUCCAs in Arabidopsis

(2011) C. Won et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The main auxin biosynthesis pathway in Arabidopsis

(2011) K. Mashiguchi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Statistics of Bulk Segregant Analysis Using Next Generation Sequencing

(2011) Paul M. Magwene et al.   PLoS Computational Biology

Construction of an integrated genetic linkage map for the A genome of Brassica napus using SSR markers derived from sequenced BACs in B. rapa

(2010) Jinsong Xu et al.   BMC GENOMICS

Branching in rice

(2010) Yonghong Wang et al.   CURRENT OPINION IN PLANT BIOLOGY

Allelic Analyses of the Arabidopsis YUC1 Locus Reveal Residues and Domains Essential for the Functions of YUC Family of Flavin Monooxygenases

(2010) Xianhui Hou et al.   Journal of Integrative Plant Biology

ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data

(2010) K. Wang et al.   NUCLEIC ACIDS RESEARCH

Bulk Segregant Analysis by High-Throughput Sequencing Reveals a Novel Xylose Utilization Gene from Saccharomyces cerevisiae

(2010) Jared W. Wenger et al.   PLoS Genetics

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Interactions Between Markers Can Be Caused by the Dominance Effect of Quantitative Trait Loci

(2008) L. Zhang et al.   GENETICS

Control of a key transition from prostrate to erect growth in rice domestication

(2008) Lubin Tan et al.   NATURE GENETICS

Standardized gene nomenclature for the Brassica genus

(2008) Lars Østergaard et al.   Plant Methods

A Genetic Framework for the Control of Cell Division and Differentiation in the Root Meristem

(2008) R. D. Ioio et al.   SCIENCE