标题
EP-DNN: A Deep Neural Network-Based Global Enhancer Prediction Algorithm
作者
关键词
-
出版物
Scientific Reports
Volume 6, Issue 1, Pages -
出版商
Springer Nature
发表日期
2016-12-08
DOI
10.1038/srep38433
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- iEnhancer-2L: a two-layer predictor for identifying enhancers and their strength by pseudok-tuple nucleotide composition
- (2015) Bin Liu et al. BIOINFORMATICS
- Roadmap for regulation
- (2015) Casey E. Romanoski et al. NATURE
- Pse-in-One: a web server for generating various modes of pseudo components of DNA, RNA, and protein sequences
- (2015) Bin Liu et al. NUCLEIC ACIDS RESEARCH
- repDNA: a Python package to generate various modes of feature vectors for DNA sequences by incorporating user-defined physicochemical properties and sequence-order effects
- (2014) Bin Liu et al. BIOINFORMATICS
- Looping Back to Leap Forward: Transcription Enters a New Era
- (2014) Michael Levine et al. CELL
- Transcriptional enhancers: from properties to genome-wide predictions
- (2014) Daria Shlyueva et al. NATURE REVIEWS GENETICS
- Active enhancer positions can be accurately predicted from chromatin marks and collective sequence motif data
- (2013) Agnieszka Podsiadło et al. BMC Systems Biology
- Modification of Enhancer Chromatin: What, How, and Why?
- (2013) Eliezer Calo et al. MOLECULAR CELL
- Charting a dynamic DNA methylation landscape of the human genome
- (2013) Michael J. Ziller et al. NATURE
- Epigenetic memory at embryonic enhancers identified in DNA methylation maps from adult mouse tissues
- (2013) Gary C Hon et al. NATURE GENETICS
- Enhancers: five essential questions
- (2013) Len A. Pennacchio et al. NATURE REVIEWS GENETICS
- kmer-SVM: a web server for identifying predictive regulatory sequence features in genomic data sets
- (2013) Christopher Fletez-Brant et al. NUCLEIC ACIDS RESEARCH
- Genome-Wide Quantitative Enhancer Activity Maps Identified by STARR-seq
- (2013) C. D. Arnold et al. SCIENCE
- RFECS: A Random-Forest Based Algorithm for Enhancer Identification from Chromatin State
- (2013) Nisha Rajagopal et al. PLoS Computational Biology
- A decade of 3C technologies: insights into nuclear organization
- (2012) E. de Wit et al. GENES & DEVELOPMENT
- Uncovering cis-regulatory sequence requirements for context-specific transcription factor binding
- (2012) J. O. Yanez-Cuna et al. GENOME RESEARCH
- Integration of ChIP-seq and machine learning reveals enhancers and a predictive regulatory sequence vocabulary in melanocytes
- (2012) D. U. Gorkin et al. GENOME RESEARCH
- Deep Neural Networks for Acoustic Modeling in Speech Recognition: The Shared Views of Four Research Groups
- (2012) Geoffrey Hinton et al. IEEE SIGNAL PROCESSING MAGAZINE
- Transcription factors: from enhancer binding to developmental control
- (2012) François Spitz et al. NATURE REVIEWS GENETICS
- Genome-wide enhancer prediction from epigenetic signatures using genetic algorithm-optimized support vector machines
- (2012) Michael Fernández et al. NUCLEIC ACIDS RESEARCH
- Functional and Mechanistic Diversity of Distal Transcription Enhancers
- (2011) Michael Bulger et al. CELL
- Enhancer and promoter interactions—long distance calls
- (2011) Ivan Krivega et al. CURRENT OPINION IN GENETICS & DEVELOPMENT
- Reprogramming transcription by distinct classes of enhancers functionally defined by eRNA
- (2011) Dong Wang et al. NATURE
- Enhancers in embryonic stem cells are enriched for transposable elements and genetic variations associated with cancers
- (2011) Li Teng et al. NUCLEIC ACIDS RESEARCH
- Genomics of Long-Range Regulatory Elements
- (2010) James P. Noonan et al. Annual Review of Genomics and Human Genetics
- Discover regulatory DNA elements using chromatin signatures and artificial neural network
- (2010) Hiram A. Firpi et al. BIOINFORMATICS
- High-resolution genome-wide in vivo footprinting of diverse transcription factors in human cells
- (2010) A. P. Boyle et al. GENOME RESEARCH
- A unique chromatin signature uncovers early developmental enhancers in humans
- (2010) Alvaro Rada-Iglesias et al. NATURE
- The NIH Roadmap Epigenomics Mapping Consortium
- (2010) Bradley E Bernstein et al. NATURE BIOTECHNOLOGY
- Transposable elements have rewired the core regulatory network of human embryonic stem cells
- (2010) Galih Kunarso et al. NATURE GENETICS
- NCBI GEO: archive for functional genomics data sets--10 years on
- (2010) T. Barrett et al. NUCLEIC ACIDS RESEARCH
- Epigenetic histone modifications of human transposable elements: genome defense versus exaptation
- (2010) Ahsan Huda et al. Mobile DNA
- Finding distal regulatory elements in the human genome
- (2009) Nathaniel D Heintzman et al. CURRENT OPINION IN GENETICS & DEVELOPMENT
- Enhancers: The abundance and function of regulatory sequences beyond promoters
- (2009) Michael Bulger et al. DEVELOPMENTAL BIOLOGY
- ChIP-seq accurately predicts tissue-specific activity of enhancers
- (2009) Axel Visel et al. NATURE
- Prediction of regulatory elements in mammalian genomes using chromatin signatures
- (2008) Kyoung-Jae Won et al. BMC BIOINFORMATICS
- Chromatin Insulators: Regulatory Mechanisms and Epigenetic Inheritance
- (2008) Ashley M. Bushey et al. MOLECULAR CELL
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