Use of whole-genome sequencing to trace, control and characterize the regional expansion of extended-spectrum β-lactamase producing ST15 Klebsiella pneumoniae

The mosaic genome structure and phylogeny of Shiga toxin-producing Escherichia coli O104:H4 is driven by short-term adaptation

(2015) K. Zhou et al.   CLINICAL MICROBIOLOGY AND INFECTION

A high-resolution genomic analysis of multidrug-resistant hospital outbreaks of Klebsiella pneumoniae

(2015) H. Chung The et al.   EMBO Molecular Medicine

Genomic analysis of diversity, population structure, virulence, and antimicrobial resistance inKlebsiella pneumoniae, an urgent threat to public health

(2015) Kathryn E. Holt et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Characterization of a CTX-M-15 Producing Klebsiella Pneumoniae Outbreak Strain Assigned to a Novel Sequence Type (1427)

(2015) Kai Zhou et al.   Frontiers in Microbiology

Trends in Extended Spectrum Beta-Lactamase (ESBL) Producing Enterobacteriaceae and ESBL Genes in a Dutch Teaching Hospital, Measured in 5 Yearly Point Prevalence Surveys (2010-2014)

(2015) Ina Willemsen et al.   PLoS One

Genome Sequencing of an Extended Series of NDM-Producing Klebsiella pneumoniae Isolates from Neonatal Infections in a Nepali Hospital Characterizes the Extent of Community- versus Hospital-Associated Transmission in an Endemic Setting

(2014) N. Stoesser et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Comparative analysis of the complete genome of KPC-2-producing Klebsiella pneumoniae Kp13 reveals remarkable genome plasticity and a wide repertoire of virulence and resistance mechanisms

(2014) Pablo Ivan Pereira Ramos et al.   BMC GENOMICS

Molecular pathogenesis ofKlebsiella pneumoniae

(2014) Bei Li et al.   Future Microbiology

Expansion of ESBL-producing Klebsiella pneumoniae in hospitalized patients: A successful story of international clones (ST15, ST147, ST336) and epidemic plasmids (IncR, IncFII K )

(2014) Carla Rodrigues et al.   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY

Carbapenem-Resistant Klebsiella pneumoniae Exhibit Variability in Capsular Polysaccharide and Capsule Associated Virulence Traits

(2014) Elizabeth Diago-Navarro et al.   JOURNAL OF INFECTIOUS DISEASES

Molecular dissection of the evolution of carbapenem-resistant multilocus sequence type 258Klebsiella pneumoniae

(2014) Frank R. DeLeo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

wzi Gene Sequencing, a Rapid Method for Determination of Capsular Type for Klebsiella Strains

(2013) S. Brisse et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Dispersal of antibiotic-resistant high-risk clones by hospital networks: changing the patient direction can make all the difference

(2013) T. Donker et al.   JOURNAL OF HOSPITAL INFECTION

Clinical epidemiology of the global expansion of Klebsiella pneumoniae carbapenemases

(2013) L Silvia Munoz-Price et al.   LANCET INFECTIOUS DISEASES

Copy Number Change of the NDM-1 Sequence in a Multidrug-Resistant Klebsiella pneumoniae Clinical Isolate

(2013) Tzu-Wen Huang et al.   PLoS One

Hypervirulent (hypermucoviscous)Klebsiella pneumoniae

(2013) Alyssa S. Shon et al.   Virulence

Outbreak of multidrug-resistant Klebsiella pneumoniae carrying qnrB1 and blaCTX-M15 in a French intensive care unit

(2013) Nathalie Filippa et al.   Annals of Intensive Care

Plasmid Content of a Clinically Relevant Klebsiella pneumoniae Clone from the Czech Republic Producing CTX-M-15 and QnrB1

(2012) M. Dolejska et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Klebsiella pneumoniae resistant to third-generation cephalosporins in five African and two Vietnamese major towns: multiclonal population structure with two major international clonal groups, CG15 and CG258

(2012) S. Breurec et al.   CLINICAL MICROBIOLOGY AND INFECTION

Tracking a Hospital Outbreak of Carbapenem-Resistant Klebsiella pneumoniae with Whole-Genome Sequencing

(2012) E. S. Snitkin et al.   Science Translational Medicine

Toward almost closed genomes with GapFiller

(2012) Marten Boetzer et al.   GENOME BIOLOGY

In Vitro Selection oframRandsoxRMutants Overexpressing Efflux Systems by Fluoroquinolones as Well as Cefoxitin in Klebsiella pneumoniae

(2011) Suzanne Bialek-Davenet et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Identification of CTX-M15-, SHV-28-producing Klebsiella pneumoniae ST15 as an epidemic clone in the Copenhagen area using a semi-automated Rep-PCR typing assay

(2011) J. B. Nielsen et al.   EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES

Klebsiella pneumoniae Yersiniabactin Promotes Respiratory Tract Infection through Evasion of Lipocalin 2

(2011) Michael A. Bachman et al.   INFECTION AND IMMUNITY

High prevalence of CTX-M-15-producing Klebsiella pneumoniae isolates in Asian countries: diverse clones and clonal dissemination

(2011) Mi Young Lee et al.   INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS

Scaffolding pre-assembled contigs using SSPACE

(2010) Marten Boetzer et al.   BIOINFORMATICS

MPprimer: a program for reliable multiplex PCR primer design

(2010) Zhiyong Shen et al.   BMC BIOINFORMATICS

progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement

(2010) Aaron E. Darling et al.   PLoS One

ABACAS: algorithm-based automatic contiguation of assembled sequences

(2009) S. Assefa et al.   BIOINFORMATICS

International Clones of Klebsiella pneumoniae and Escherichia coli with Extended-Spectrum  -Lactamases in a Czech Hospital

(2009) J. Hrabak et al.   JOURNAL OF CLINICAL MICROBIOLOGY

The RAST Server: Rapid Annotations using Subsystems Technology

(2008) Ramy K Aziz et al.   BMC GENOMICS

Bad Bugs, No Drugs: No ESKAPE! An Update from the Infectious Diseases Society of America

(2008) Helen W. Boucher et al.   CLINICAL INFECTIOUS DISEASES

Expansion and countrywide dissemination of ST11, ST15 and ST147 ciprofloxacin-resistant CTX-M-15-type  -lactamase-producing Klebsiella pneumoniae epidemic clones in Hungary in 2005--the new 'MRSAs'?

(2008) I. Damjanova et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY