miR-isomiRExp: a web-server for the analysis of expression of miRNA at the miRNA/isomiR levels

Predictive genomics: A cancer hallmark network framework for predicting tumor clinical phenotypes using genome sequencing data

(2015) Edwin Wang et al.   SEMINARS IN CANCER BIOLOGY

IsomiR expression profiles in human lymphoblastoid cell lines exhibit population and gender dependencies

(2015) Phillipe Loher et al.   Oncotarget

In-Depth Exploration of miRNA: A New Approach to Study miRNA at the miRNA/isomiR Levels

(2014) Li Guo et al.   Current Bioinformatics

A challenge for miRNA: multiple isomiRs in miRNAomics

(2014) Li Guo et al.   GENE

5′ isomiR variation is of functional and evolutionary importance

(2014) Geok Chin Tan et al.   NUCLEIC ACIDS RESEARCH

YM500v2: a small RNA sequencing (smRNA-seq) database for human cancer miRNome research

(2014) Wei-Chung Cheng et al.   NUCLEIC ACIDS RESEARCH

A Novel miR-451a isomiR, Associated with Amelanotypic Phenotype, Acts as a Tumor Suppressor in Melanoma by Retarding Cell Migration and Invasion

(2014) Sankhiros Babapoor et al.   PLoS One

3′ IsomiR Species and DNA Contamination Influence Reliable Quantification of MicroRNAs by Stem-Loop Quantitative PCR

(2014) Anita Schamberger et al.   PLoS One

An Integrated Analysis of miRNA, lncRNA, and mRNA Expression Profiles

(2014) Li Guo et al.   Biomed Research International

Integrative Analysis of miRNA-mRNA and miRNA-miRNA Interactions

(2014) Li Guo et al.   Biomed Research International

Microarray and deep sequencing cross-platform analysis of the mirRNome and isomiR variation in response to epidermal growth factor

(2013) Franc Llorens et al.   BMC GENOMICS

A highly expressed miR-101 isomiR is a functional silencing small RNA

(2013) Franc Llorens et al.   BMC GENOMICS

isomiRex: Web-based identification of microRNAs, isomiR variations and differential expression using next-generation sequencing datasets

(2013) Gaurav Sablok et al.   FEBS LETTERS

Integrated evolutionary analysis of human miRNA gene clusters and families implicates evolutionary relationships

(2013) Li Guo et al.   GENE

miRBase: annotating high confidence microRNAs using deep sequencing data

(2013) Ana Kozomara et al.   NUCLEIC ACIDS RESEARCH

The anti-metastatic activity of collagenase-2 in breast cancer cells is mediated by a signaling pathway involving decorin and miR-21

(2013) C Soria-Valles et al.   ONCOGENE

miRNA–miRNA interaction implicates for potential mutual regulatory pattern

(2012) Li Guo et al.   GENE

YM500: a small RNA sequencing (smRNA-seq) database for microRNA research

(2012) Wei-Chung Cheng et al.   NUCLEIC ACIDS RESEARCH

IsomiRs – the overlooked repertoire in the dynamic microRNAome

(2012) Corine T. Neilsen et al.   TRENDS IN GENETICS

Tracking miRNA precursor metabolic products and processing sites through completely analyzing high-throughput sequencing data

(2011) Li Guo et al.   MOLECULAR BIOLOGY REPORTS

A Comprehensive Survey of miRNA Repertoire and 3′ Addition Events in the Placentas of Patients with Pre-Eclampsia from High-Throughput Sequencing

(2011) Li Guo et al.   PLoS One

Cross-Mapping Events in miRNAs Reveal Potential miRNA-Mimics and Evolutionary Implications

(2011) Li Guo et al.   PLoS One

A comprehensive survey of 3' animal miRNA modification events and a possible role for 3' adenylation in modulating miRNA targeting effectiveness

(2010) A. M. Burroughs et al.   GENOME RESEARCH

Dynamic isomiR regulation in Drosophila development

(2010) S. L. Fernandez-Valverde et al.   RNA

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa

(2008) R. D. Morin et al.   GENOME RESEARCH

Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells

(2008) R. D. Morin et al.   GENOME RESEARCH