From link-prediction in brain connectomes and protein interactomes to the local-community-paradigm in complex networks

Link prediction in complex networks: a clustering perspective

(2012) X. Feng et al.   EUROPEAN PHYSICAL JOURNAL B

Popularity versus similarity in growing networks

(2012) Fragkiskos Papadopoulos et al.   NATURE

RING: networking interacting residues, evolutionary information and energetics in protein structures

(2011) A. J. M. Martin et al.   BIOINFORMATICS

Network anatomy and in vivo physiology of visual cortical neurons

(2011) Davi D. Bock et al.   NATURE

Controllability of complex networks

(2011) Yang-Yu Liu et al.   NATURE

Structural Properties of the Caenorhabditis elegans Neuronal Network

(2011) Lav R. Varshney et al.   PLoS Computational Biology

Using manifold embedding for assessing and predicting protein interactions from high-throughput experimental data

(2010) Z.-H. You et al.   BIOINFORMATICS

Link communities reveal multiscale complexity in networks

(2010) Yong-Yeol Ahn et al.   NATURE

The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored

(2010) D. Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

Link prediction in complex networks: A survey

(2010) Linyuan Lü et al.   PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS

Characterizing the Community Structure of Complex Networks

(2010) Andrea Lancichinetti et al.   PLoS One

Complex discovery from weighted PPI networks

(2009) Guimei Liu et al.   BIOINFORMATICS

Predicting missing links via local information

(2009) Tao Zhou et al.   EUROPEAN PHYSICAL JOURNAL B

New tricks and old spines

(2009) Noam E. Ziv et al.   NATURE

Missing and spurious interactions and the reconstruction of complex networks

(2009) Roger Guimerà et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Food webs are more than the sum of their tritrophic parts

(2009) Joel E. Cohen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Geometric De-noising of Protein-Protein Interaction Networks

(2009) Oleksii Kuchaiev et al.   PLoS Computational Biology

Protein fingerprints of cultured CA3-CA1 hippocampal neurons: comparative analysis of the distribution of synaptosomal and cytosolic proteins

(2008) Valeria Corti et al.   BMC NEUROSCIENCE

Hierarchical structure and the prediction of missing links in networks

(2008) Aaron Clauset et al.   NATURE

Navigability of complex networks

(2008) Marián Boguñá et al.   Nature Physics