Using phylogenetic information and the comparative method to evaluate hypotheses in macroecology

MCMC Methods for Multi-Response Generalized Linear Mixed Models: TheMCMCglmmRPackage

(2015) Jarrod D. Hadfield   Journal of Statistical Software

INTEGRATING FOSSILS WITH MOLECULAR PHYLOGENIES IMPROVES INFERENCE OF TRAIT EVOLUTION

(2012) Graham J. Slater et al.   EVOLUTION

MODELING STABILIZING SELECTION: EXPANDING THE ORNSTEIN-UHLENBECK MODEL OF ADAPTIVE EVOLUTION

(2012) Jeremy M. Beaulieu et al.   EVOLUTION

Body Size Evolution in Extant Oryzomyini Rodents: Cope's Rule or Miniaturization?

(2012) Jorge Avaria-Llautureo et al.   PLoS One

Independent Contrasts and PGLS Regression Estimators Are Equivalent

(2012) Simon P. Blomberg et al.   SYSTEMATIC BIOLOGY

Effects of Phylogenetic Signal on Ancestral State Reconstruction

(2012) Glenn Litsios et al.   SYSTEMATIC BIOLOGY

Diversitree: comparative phylogenetic analyses of diversification in R

(2012) Richard G. FitzJohn   Methods in Ecology and Evolution

How to measure and test phylogenetic signal

(2012) Tamara Münkemüller et al.   Methods in Ecology and Evolution

EVOLUTION OF EXTREME BODY SIZE DISPARITY IN MONITOR LIZARDS (VARANUS)

(2011) David C. Collar et al.   EVOLUTION

A NEW PHYLOGENETIC METHOD FOR IDENTIFYING EXCEPTIONAL PHENOTYPIC DIVERSIFICATION

(2011) Liam J. Revell et al.   EVOLUTION

Multiple routes to mammalian diversity

(2011) Chris Venditti et al.   NATURE

Body Size Evolution in Mammals: Complexity in Tempo and Mode

(2010) Natalie Cooper et al.   AMERICAN NATURALIST

Placentation and Maternal Investment in Mammals

(2010) Isabella Capellini et al.   AMERICAN NATURALIST

Phylogeny and metabolic scaling in mammals

(2010) Isabella Capellini et al.   ECOLOGY

SHORT COMMUNICATION: Little evidence for Cope’s rule from Bayesian phylogenetic analysis of extant mammals

(2010) M. J. MONROE et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

A Phylogenetic Model for Investigating Correlated Evolution of Substitution Rates and Continuous Phenotypic Characters

(2010) N. Lartillot et al.   MOLECULAR BIOLOGY AND EVOLUTION

Speciation along a depth gradient in a marine adaptive radiation

(2010) Travis Ingram   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Quantitative Traits and Diversification

(2010) Richard G. FitzJohn   SYSTEMATIC BIOLOGY

Assessment of the Relative Merits of a Few Methods to Detect Evolutionary Trends

(2010) Michel Laurin   SYSTEMATIC BIOLOGY

Phylogenetic signal and linear regression on species data

(2010) Liam J. Revell   Methods in Ecology and Evolution

Rockfish (Sebastes) that are evolutionarily isolated are also large, morphologically distinctive and vulnerable to overfishing

(2009) Karen Magnuson-Ford et al.   BIOLOGICAL CONSERVATION

Interplay between global patterns of environmental temperature and variation in nonshivering thermogenesis of rodent species across large spatial scales

(2009) ENRIQUE RODRÍGUEZ-SERRANO et al.   GLOBAL CHANGE BIOLOGY

The seven deadly sins of comparative analysis

(2009) R. P. FRECKLETON   JOURNAL OF EVOLUTIONARY BIOLOGY

Genotypic sex determination enabled adaptive radiations of extinct marine reptiles

(2009) Chris L. Organ et al.   NATURE

Phylogenetic Logistic Regression for Binary Dependent Variables

(2009) Anthony R. Ives et al.   SYSTEMATIC BIOLOGY

Relating Traits to Diversification: A Simple Test

(2008) Robert P. Freckleton et al.   AMERICAN NATURALIST

DETECTION OF “PUNCTUATED EQUILIBRIUM” BY BAYESIAN ESTIMATION OF SPECIATION AND EXTINCTION RATES, ANCESTRAL CHARACTER STATES, AND RATES OF ANAGENETIC AND CLADOGENETIC EVOLUTION ON A MOLECULAR PHYLOGENY

(2008) Folmer Bokma   EVOLUTION

Morphometrics of the Avian Small Intestine Compared with That of Nonflying Mammals: A Phylogenetic Approach

(2008) Shana R. Lavin et al.   PHYSIOLOGICAL AND BIOCHEMICAL ZOOLOGY

Macroecology: more than the division of food and space among species on continents

(2008) Felisa A. Smith et al.   PROGRESS IN PHYSICAL GEOGRAPHY