NeuroMorph: A Software Toolset for 3D Analysis of Neurite Morphology and Connectivity

Progress and remaining challenges in high-throughput volume electron microscopy

(2018) Jörgen Kornfeld et al.   CURRENT OPINION IN NEUROBIOLOGY

Computer assisted detection of axonal bouton structural plasticity in in vivo time-lapse images

(2017) Rohan Gala et al.   eLife

Microscopy Image Browser: A Platform for Segmentation and Analysis of Multidimensional Datasets

(2016) Ilya Belevich et al.   PLOS BIOLOGY

Delayed and Temporally Imprecise Neurotransmission in Reorganizing Cortical Microcircuits

(2015) S. J. Barnes et al.   JOURNAL OF NEUROSCIENCE

NeuroMorph: A Toolset for the Morphometric Analysis and Visualization of 3D Models Derived from Electron Microscopy Image Stacks

(2014) Anne Jorstad et al.   NEUROINFORMATICS

Intuitive representation of surface properties of biomolecules using BioBlender

(2012) Raluca Andrei et al.   BMC BIOINFORMATICS

TrakEM2 Software for Neural Circuit Reconstruction

(2012) Albert Cardona et al.   PLoS One

High-accuracy neurite reconstruction for high-throughput neuroanatomy

(2011) Moritz Helmstaedter et al.   NATURE NEUROSCIENCE

Espina: A Tool for the Automated Segmentation and Counting of Synapses in Large Stacks of Electron Microscopy Images

(2011) Juan Morales et al.   Frontiers in Neuroanatomy

An image-based modeling framework for patient-specific computational hemodynamics

(2008) Luca Antiga et al.   MEDICAL & BIOLOGICAL ENGINEERING & COMPUTING

Fast Monte Carlo Simulation Methods for Biological Reaction-Diffusion Systems in Solution and on Surfaces

(2008) Rex A. Kerr et al.   SIAM JOURNAL ON SCIENTIFIC COMPUTING