How to link ontologies and protein-protein interactions to literature: text-mining approaches and the BioCreative experience

An Overview of BioCreative II.5

(2010) F Leitner et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

A Genetic Screen Identifies FAN1, a Fanconi Anemia-Associated Nuclease Necessary for DNA Interstrand Crosslink Repair

(2010) Agata Smogorzewska et al.   MOLECULAR CELL

Phenotypic profiling of the human genome by time-lapse microscopy reveals cell division genes

(2010) Beate Neumann et al.   NATURE

The FEBS Letters/BioCreative II.5 experiment: making biological information accessible

(2010) Florian Leitner et al.   NATURE BIOTECHNOLOGY

Ontology engineering

(2010) Gil Alterovitz et al.   NATURE BIOTECHNOLOGY

MIPS: curated databases and comprehensive secondary data resources in 2010

(2010) H. Werner Mewes et al.   NUCLEIC ACIDS RESEARCH

MatrixDB, the extracellular matrix interaction database

(2010) E. Chautard et al.   NUCLEIC ACIDS RESEARCH

The BioGRID Interaction Database: 2011 update

(2010) C. Stark et al.   NUCLEIC ACIDS RESEARCH

The 2011 Nucleic Acids Research Database Issue and the online Molecular Biology Database Collection

(2010) M. Y. Galperin et al.   NUCLEIC ACIDS RESEARCH

Text mining and manual curation of chemical-gene-disease networks for the Comparative Toxicogenomics Database (CTD)

(2009) Thomas C Wiegers et al.   BMC BIOINFORMATICS

The Gene Wiki: community intelligence applied to human gene annotation

(2009) Jon W. Huss et al.   NUCLEIC ACIDS RESEARCH

MINT, the molecular interaction database: 2009 update

(2009) Arnaud Ceol et al.   NUCLEIC ACIDS RESEARCH

The IntAct molecular interaction database in 2010

(2009) B. Aranda et al.   NUCLEIC ACIDS RESEARCH

Semantic Similarity in Biomedical Ontologies

(2009) Catia Pesquita et al.   PLoS Computational Biology

MPIDB: the microbial protein interaction database

(2008) Johannes Goll et al.   BIOINFORMATICS

Finally: The digital, democratic age of scientific abstracts

(2008) Giulio Superti-Furga   FEBS LETTERS

Manually structured digital abstracts: A scaffold for automatic text mining

(2008) Michael Seringhaus et al.   FEBS LETTERS