A cost-effective straightforward protocol for shotgun Illumina libraries designed to assemble complete mitogenomes from non-model species

Ascidian Mitogenomics: Comparison of Evolutionary Rates in Closely Related Taxa Provides Evidence of Ongoing Speciation Events

(2014) Francesca Griggio et al.   Genome Biology and Evolution

Complete mitogenome of asiatic lion resolves phylogenetic status within Panthera

(2013) Snehal B Bagatharia et al.   BMC GENOMICS

Deep Sequencing of Mixed Total DNA without Barcodes Allows Efficient Assembly of Highly Plastic Ascidian Mitochondrial Genomes

(2013) Nimrod D. Rubinstein et al.   Genome Biology and Evolution

Targeted multiplex next-generation sequencing: advances in techniques of mitochondrial and nuclear DNA sequencing for population genomics

(2013) Brittany L. Hancock-Hanser et al.   Molecular Ecology Resources

Next-generation sequencing and phylogenetic signal of complete mitochondrial genomes for resolving the evolutionary history of leaf-nosed bats (Phyllostomidae)

(2013) Fidel Botero-Castro et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Assessing DNA Barcoding as a Tool for Species Identification and Data Quality Control

(2013) Yong-Yi Shen et al.   PLoS One

Complete mitochondrial genome phylogeographic analysis of killer whales (Orcinus orca) indicates multiple species

(2010) P. A. Morin et al.   GENOME RESEARCH

Multiplexed DNA Sequence Capture of Mitochondrial Genomes Using PCR Products

(2010) Tomislav Maricic et al.   PLoS One

ABySS: A parallel assembler for short read sequence data

(2009) J. T. Simpson et al.   GENOME RESEARCH