A conformation ensemble approach to protein residue-residue contact

Hidden conformations in protein structures

(2011) Haim Ashkenazy et al.   BIOINFORMATICS

Using multi-data hidden Markov models trained on local neighborhoods of protein structure to predict residue–residue contacts

(2009) Patrik Björkholm et al.   BIOINFORMATICS

NNcon: improved protein contact map prediction using 2D-recursive neural networks

(2009) A. N. Tegge et al.   NUCLEIC ACIDS RESEARCH

Peptides modulating conformational changes in secreted chaperones: From in silico design to preclinical proof of concept

(2009) Y. Kliger et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Using inferred residue contacts to distinguish between correct and incorrect protein models

(2008) Christopher S. Miller et al.   BIOINFORMATICS

A comprehensive assessment of sequence-based and template-based methods for protein contact prediction

(2008) Sitao Wu et al.   BIOINFORMATICS

Progress and challenges in protein structure prediction

(2008) Yang Zhang   CURRENT OPINION IN STRUCTURAL BIOLOGY

Predicting residue-residue contact maps by a two-layer, integrated neural-network method

(2008) Bin Xue et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Evaluating the absolute quality of a single protein model using structural features and support vector machines

(2008) Zheng Wang et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS