LTR retrotransposons transcribed in oocytes drive species-specific and heritable changes in DNA methylation
出版年份 2018 全文链接
标题
LTR retrotransposons transcribed in oocytes drive species-specific and heritable changes in DNA methylation
作者
关键词
-
出版物
Nature Communications
Volume 9, Issue 1, Pages -
出版商
Springer Nature America, Inc
发表日期
2018-08-14
DOI
10.1038/s41467-018-05841-x
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Development and application of an integrated allele-specific pipeline for methylomic and epigenomic analysis (MEA)
- (2018) Julien Richard Albert et al. BMC GENOMICS
- Long terminal repeats power evolution of genes and gene expression programs in mammalian oocytes and zygotes
- (2017) Vedran Franke et al. GENOME RESEARCH
- Lineage-specific functions of TET1 in the postimplantation mouse embryo
- (2017) Rita Khoueiry et al. NATURE GENETICS
- Conserved roles of mouse DUX and human DUX4 in activating cleavage-stage genes and MERVL/HERVL retrotransposons
- (2017) Peter G Hendrickson et al. NATURE GENETICS
- ChAsE: chromatin analysis and exploration tool
- (2016) Hamid Younesy et al. BIOINFORMATICS
- Maternal DNA Methylation Regulates Early Trophoblast Development
- (2016) Miguel R. Branco et al. DEVELOPMENTAL CELL
- Pervasive polymorphic imprinted methylation in the human placenta
- (2016) Courtney W. Hanna et al. GENOME RESEARCH
- Long Terminal Repeats: From Parasitic Elements to Building Blocks of the Transcriptional Regulatory Repertoire
- (2016) Peter J. Thompson et al. MOLECULAR CELL
- Allelic reprogramming of the histone modification H3K4me3 in early mammalian development
- (2016) Bingjie Zhang et al. NATURE
- TET-mediated DNA demethylation controls gastrulation by regulating Lefty–Nodal signalling
- (2016) Hai-Qiang Dai et al. NATURE
- Endogenous retroviral promoter exaptation in human cancer
- (2016) Artem Babaian et al. Mobile DNA
- VisRseq: R-based visual framework for analysis of sequencing data
- (2015) Hamid Younesy et al. BMC BIOINFORMATICS
- Changepoint detection in base-resolution methylome data reveals a robust signature of methylated domain landscape
- (2015) Takao Yokoyama et al. BMC GENOMICS
- The Transcriptome and DNA Methylome Landscapes of Human Primordial Germ Cells
- (2015) Fan Guo et al. CELL
- Dynamic changes in histone modifications precede de novo DNA methylation in oocytes
- (2015) Kathleen R. Stewart et al. GENES & DEVELOPMENT
- The Mouse Genomes Project: a repository of inbred laboratory mouse strain genomes
- (2015) David J. Adams et al. MAMMALIAN GENOME
- Intrinsic retroviral reactivation in human preimplantation embryos and pluripotent cells
- (2015) Edward J. Grow et al. NATURE
- Genomic profiling of DNA methyltransferases reveals a role for DNMT3B in genic methylation
- (2015) Tuncay Baubec et al. NATURE
- An ultra-low-input native ChIP-seq protocol for genome-wide profiling of rare cell populations
- (2015) Julie Brind’Amour et al. Nature Communications
- Absence of Maternal Methylation in Biparental Hydatidiform Moles from Women with NLRP7 Maternal-Effect Mutations Reveals Widespread Placenta-Specific Imprinting
- (2015) Marta Sanchez-Delgado et al. PLoS Genetics
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- Programming and Inheritance of Parental DNA Methylomes in Mammals
- (2014) Lu Wang et al. CELL
- Pan-vertebrate comparative genomics unmasks retrovirus macroevolution
- (2014) Alexander Hayward et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Genome-Wide Analysis of DNA Methylation Dynamics during Early Human Development
- (2014) Hiroaki Okae et al. PLoS Genetics
- A Retrotransposon-Driven Dicer Isoform Directs Endogenous Small Interfering RNA Production in Mouse Oocytes
- (2013) Matyas Flemr et al. CELL
- An Interactive Analysis and Exploration Tool for Epigenomic Data
- (2013) H. Younesy et al. COMPUTER GRAPHICS FORUM
- Rates and patterns of great ape retrotransposition
- (2013) F. Hormozdiari et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Mouse Oocyte Methylomes at Base Resolution Reveal Genome-Wide Accumulation of Non-CpG Methylation and Role of DNA Methyltransferases
- (2013) Kenjiro Shirane et al. PLoS Genetics
- STAR: ultrafast universal RNA-seq aligner
- (2012) Alexander Dobin et al. BIOINFORMATICS
- Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration
- (2012) H. Thorvaldsdottir et al. BRIEFINGS IN BIOINFORMATICS
- Protection against De Novo Methylation Is Instrumental in Maintaining Parent-of-Origin Methylation Inherited from the Gametes
- (2012) Charlotte Proudhon et al. MOLECULAR CELL
- Embryonic stem cell potency fluctuates with endogenous retrovirus activity
- (2012) Todd S. Macfarlan et al. NATURE
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Amplification-free whole-genome bisulfite sequencing by post-bisulfite adaptor tagging
- (2012) Fumihito Miura et al. NUCLEIC ACIDS RESEARCH
- Contribution of Intragenic DNA Methylation in Mouse Gametic DNA Methylomes to Establish Oocyte-Specific Heritable Marks
- (2012) Hisato Kobayashi et al. PLoS Genetics
- The genomic landscape shaped by selection on transposable elements across 18 mouse strains
- (2012) Christoffer Nellåker et al. GENOME BIOLOGY
- Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications
- (2011) Felix Krueger et al. BIOINFORMATICS
- Silencing of endogenous retroviruses: when and why do histone marks predominate?
- (2011) Danny C. Leung et al. TRENDS IN BIOCHEMICAL SCIENCES
- Characterization and potential functional significance of human-chimpanzee large INDEL variation
- (2011) Nalini Polavarapu et al. Mobile DNA
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- The regulated retrotransposon transcriptome of mammalian cells
- (2009) Geoffrey J Faulkner et al. NATURE GENETICS
- BioVenn – a web application for the comparison and visualization of biological lists using area-proportional Venn diagrams
- (2008) Tim Hulsen et al. BMC GENOMICS
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