Phylogenetic applications of whole Y-chromosome sequences and the Near Eastern origin of Ashkenazi Levites

An African American Paternal Lineage Adds an Extremely Ancient Root to the Human Y Chromosome Phylogenetic Tree

(2013) Fernando L. Mendez et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Y-Chromosome Diversity in Modern Bulgarians: New Clues about Their Ancestry

(2013) Sena Karachanak et al.   PLoS One

Afghan Hindu Kush: Where Eurasian Sub-Continent Gene Flows Converge

(2013) Julie Di Cristofaro et al.   PLoS One

Identifying Personal Genomes by Surname Inference

(2013) M. Gymrek et al.   SCIENCE

Mitochondrial DNA and Y Chromosome Variation Provides Evidence for a Recent Common Ancestry between Native Americans and Indigenous Altaians

(2012) Matthew C. Dulik et al.   AMERICAN JOURNAL OF HUMAN GENETICS

A calibrated human Y-chromosomal phylogeny based on resequencing

(2012) W. Wei et al.   GENOME RESEARCH

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Discovery of Western European R1b1a2 Y Chromosome Variants in 1000 Genomes Project Data: An Online Community Approach

(2012) Richard A. Rocca et al.   PLoS One

Ancient Migratory Events in the Middle East: New Clues from the Y-Chromosome Variation of Modern Iranians

(2012) Viola Grugni et al.   PLoS One

In search of the genetic footprints of Sumerians: a survey of Y-chromosome and mtDNA variation in the Marsh Arabs of Iraq

(2011) Nadia Al-Zahery et al.   BMC EVOLUTIONARY BIOLOGY

The Architecture of Long-Range Haplotypes Shared within and across Populations

(2011) A. Gusev et al.   MOLECULAR BIOLOGY AND EVOLUTION

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

The peopling of Europe and the cautionary tale of Y chromosome lineage R-M269

(2011) G. B. J. Busby et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Abraham's Children in the Genome Era: Major Jewish Diaspora Populations Comprise Distinct Genetic Clusters with Shared Middle Eastern Ancestry

(2010) Gil Atzmon et al.   AMERICAN JOURNAL OF HUMAN GENETICS

A major Y-chromosome haplogroup R1b Holocene era founder effect in Central and Western Europe

(2010) Natalie M Myres et al.   EUROPEAN JOURNAL OF HUMAN GENETICS

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

The genome-wide structure of the Jewish people

(2010) Doron M. Behar et al.   NATURE

Mitochondrial and Y-chromosome diversity of the Tharus (Nepal): a reservoir of genetic variation

(2009) Simona Fornarino et al.   BMC EVOLUTIONARY BIOLOGY

Human Y Chromosome Base-Substitution Mutation Rate Measured by Direct Sequencing in a Deep-Rooting Pedigree

(2009) Yali Xue et al.   CURRENT BIOLOGY

Separating the post-Glacial coancestry of European and Asian Y chromosomes within haplogroup R1a

(2009) Peter A Underhill et al.   EUROPEAN JOURNAL OF HUMAN GENETICS

Extended Y chromosome haplotypes resolve multiple and unique lineages of the Jewish priesthood

(2009) Michael F. Hammer et al.   HUMAN GENETICS

Bayesian phylogenetic analysis of Semitic languages identifies an Early Bronze Age origin of Semitic in the Near East

(2009) A. Kitchen et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Human Genome Sequencing Using Unchained Base Reads on Self-Assembling DNA Nanoarrays

(2009) R. Drmanac et al.   SCIENCE

The Genetic Legacy of Religious Diversity and Intolerance: Paternal Lineages of Christians, Jews, and Muslims in the Iberian Peninsula

(2008) Susan M. Adams et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Two Sources of the Russian Patrilineal Heritage in Their Eurasian Context

(2008) Oleg Balanovsky et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Differential Y-chromosome Anatolian Influences on the Greek and Cretan Neolithic

(2008) R. J. King et al.   ANNALS OF HUMAN GENETICS

Y-chromosomal evidence of the cultural diffusion of agriculture in southeast Europe

(2008) Vincenza Battaglia et al.   EUROPEAN JOURNAL OF HUMAN GENETICS

New binary polymorphisms reshape and increase resolution of the human Y chromosomal haplogroup tree

(2008) T. M. Karafet et al.   GENOME RESEARCH

Counting the Founders: The Matrilineal Genetic Ancestry of the Jewish Diaspora

(2008) Doron M. Behar et al.   PLoS One