Article
Biology
Tao Feng, Boas Pucker, Tianhui Kuang, Bo Song, Ya Yang, Nan Lin, Huajie Zhang, Michael J. Moore, Samuel F. Brockington, Qingfeng Wang, Tao Deng, Hengchang Wang, Hang Sun
Summary: Glasshouse plants have evolved specialized morphology to adapt to intensive UV radiation and low temperature. The glasshouse structure of specialized cauline leaves effectively absorbs UV light and creates an optimal microclimate for reproductive organ development. The genome sequence of Rheum nobile, a flagship glasshouse plant, reveals key genetic network modules related to the morphological transition to specialized glasshouse leaves.
COMMUNICATIONS BIOLOGY
(2023)
Article
Biology
Ying Li, Zhimin Niu, Mingjia Zhu, Zhenyue Wang, Renping Xu, Minjie Li, Zeyu Zheng, Zhiqiang Lu, Congcong Dong, Hongyin Hu, Yingbo Yang, Ying Wu, Dandan Wang, Jinli Yang, Jin Zhang, Dongshi Wan, Richard Abbott, Jianquan Liu, Yongzhi Yang
Summary: Subnival glasshouse plants, such as the Noble rhubarb, have adapted to high-altitude environments through specialized reproductive organs, reduced photosynthesis, enhanced defense against UV irradiation, and unique structural characteristics. Comparative genomic analysis reveals the importance of gene expansion and retention from whole-genome duplication events in subnival adaptation. Additionally, the accumulation of antifreeze proteins and various metabolites in over-wintering roots contributes to the survival of these plants under extreme conditions.
COMMUNICATIONS BIOLOGY
(2023)
Article
Plant Sciences
Neelesh Sharma, Bikram Pratap Banerjee, Matthew Hayden, Surya Kant
Summary: Advanced plant phenotyping techniques using different sensors for image acquisition and analysis are helping to deliver improved crop varieties faster.
Article
Plant Sciences
Santosh Kumar Rana, Hum Kala Rana, Juerg Stoecklin, Sailesh Ranjitkar, Hang Sun, Bo Song
Summary: Global warming is pushing alpine plants towards mountaintops, increasing the risk of extinction. Two alpine 'glasshouse' species have shown significant range shifts in response to climate change, mainly driven by precipitation. This study highlights the importance of conservation efforts for these species.
FRONTIERS IN PLANT SCIENCE
(2022)
Article
Plant Sciences
Karin Groten, Felipe Yon, Ian T. Baldwin
Summary: The interaction between Nicotiana attenuata and arbuscular mycorrhizal fungi affects its intraspecific competitive ability but not overall community productivity.
Article
Chemistry, Multidisciplinary
Yating Liu, Linrui Wu, Zixin Deng, Yi Yu
Summary: Epimedium plants have high economic value in producing prenyl-flavonoid glycosides, but the genes responsible for their biosynthesis remain unclear.
Editorial Material
Biochemistry & Molecular Biology
Pedro Robles, Victor Quesada
Summary: The articles collected in the Special Issue on Organelle Genetics in Plants cover a wide range of topics related to chloroplasts and plant mitochondria research, including organellar gene expression, sequencing and characterization of mitochondrial and chloroplast genomes, and recent advances in plastid genome engineering. These works represent the latest research on the genetics, genomics, and biotechnology of chloroplasts and mitochondria.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2021)
Article
Agriculture, Multidisciplinary
Zhilong Bian, Mei Wang, Yan Yang, Yuxia Wu, Haiping Ni, Xu Yu, Jing Shi, Hanna Chen, Xiaoying Bian, Deng Pan, Tao Li, Youming Zhang, Lei Yu, Lihua Jiang, Qiang Tu
Summary: Inoculation of the N-fixing strain Pseudomonas protegens CHA0-Delta retS-nif on ginger plants promoted plant growth, increased rhizome yields, enhanced nitrogen and potassium acquisition, and had little impact on phosphorus uptake. Additionally, it positively affected the population size of bacteria and earthworms in the rhizosphere.
JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE
(2022)
Article
Plant Sciences
Frank Gyan Okyere, Daniel Cudjoe, Pouria Sadeghi-Tehran, Nicolas Virlet, Andrew B. B. Riche, March Castle, Latifa Greche, Fady Mohareb, Daniel Simms, Manal Mhada, Malcolm John Hawkesford
Summary: This study aimed to develop a fast and robust neural-network-based segmentation tool for high-throughput phenotyping of plants in both field and glasshouse environments. The proposed method outperformed other methods in producing quality segmented images with over 98%-pixel classification accuracy, making it an essential tool for the development of a data analysis pipeline for high-throughput plant phenotyping.
Article
Biochemistry & Molecular Biology
Alexander S. T. Papadopulos, Andrew J. Helmstetter, Owen G. Osborne, Aaron A. Comeault, Daniel P. Wood, Edward A. Straw, Laurence Mason, Michael F. Fay, Joe Parker, Luke T. Dunning, Andrew D. Foote, Rhian J. Smith, Jackie Lighten
Summary: Evolutionary responses to human-mediated environmental change, such as pollution, in the wild plant Silene uniflora have been found to be complex and polygenic. Although rapid adaptation to extreme conditions like zinc contamination occurred independently in different mine populations, genetic differentiation was only partially shared between these populations. The study suggests that predicting evolutionary outcomes based on genomic data can be challenging due to idiosyncrasies at the genetic level.
MOLECULAR BIOLOGY AND EVOLUTION
(2021)
Article
Multidisciplinary Sciences
Haixia Chen, Tsan-Yu Chiu, Sunil Kumar Sahu, Haixi Sun, Jiawen Wen, Jianbo Sun, Qiyuan Li, Yangfan Tang, Hong Jin, Huan Liu
Summary: This study reveals the impact of chlorophyll degradation enzymes on purple pigmentation in Rheum tanguticum and provides insights into the transcriptional regulation and biosynthesis of medicinally active compounds in the future.
Review
Parasitology
Catherine J. Merrick
Summary: The phenomenon of relapsing malaria, caused by Plasmodium vivax and Plasmodium ovale, shares similarities with plant vernalisation, which could potentially provide a useful framework for studying the biology of hypnozoites.
TRENDS IN PARASITOLOGY
(2021)
Article
Biochemistry & Molecular Biology
Jose Cerca
Summary: Studying the concepts and definitions of parallel and convergent evolution is crucial for understanding evolutionary patterns. A consolidated framework is proposed to address the inconsistencies and confusion in existing concepts and definitions. This framework aims to harmonize the concepts of parallel and convergent evolution with natural selection and the idea of similarity.
Review
Plant Sciences
Sylvia P. Kinosian, Carol A. Rowe, Paul G. Wolf
Summary: The mechanisms controlling chromosome number and its relationship to genome size in plants are not fully understood. There is a stark difference in chromosome number between homosporous and heterosporous lineages, and understanding the reasons behind this difference is of great importance for evolutionary biology.
FRONTIERS IN PLANT SCIENCE
(2022)
Editorial Material
Multidisciplinary Sciences
Eric Allan
Summary: A field experiment offers a new approach to explore the mechanisms through which grazing, fertilizer use, and light availability can influence the biodiversity of a grassland plant community.
Article
Biodiversity Conservation
Nicolas Friess, Joerg C. Mueller, Pablo Aramendi, Claus Baessler, Martin Braendle, Christophe Bouget, Antoine Brin, Heinz Bussler, Kostadin B. Georgiev, Radoslaw Gil, Martin M. Gossner, Jacob Heilmann-Clausen, Gunnar Isacsson, Anton Kristin, Thibault Lachat, Laurent Larrieu, Elodie Magnanou, Alexander Maringer, Ulrich Mergner, Martin Mikolas, Lars Opgenoorth, Juergen Schmidl, Miroslav Svoboda, Simon Thorn, Kris Vandekerkhove, Al Vrezec, Thomas Wagner, Maria-Barbara Winter, Livia Zapponi, Roland Brandl, Sebastian Seibold
DIVERSITY AND DISTRIBUTIONS
(2019)
Article
Environmental Sciences
Camilla Avanzi, Alma Piermattei, Andrea Piotti, Ulf Buntgen, Katrin Heer, Lars Opgenoorth, Ilaria Spanu, Carlo Urbinati, Giovanni Giuseppe Vendramin, Stefano Leonardi
SCIENCE OF THE TOTAL ENVIRONMENT
(2019)
Article
Multidisciplinary Sciences
Goetz Ossendorf, Alexander R. Groos, Tobias Bromm, Minassie Girma Tekelemariam, Bruno Glaser, Josephine Lesur, Joachim Schmidt, Naki Akcar, Tamrat Bekele, Alemseged Beldados, Sebsebe Demissew, Trhas Hadush Kahsay, Barbara P. Nash, Thomas Nauss, Agazi Negash, Sileshi Nemomissa, Heinz Veit, Ralf Vogelsang, Zerihun Woldu, Wolfgang Zech, Lars Opgenoorth, Georg Miehe
Review
Plant Sciences
Maximiliano Estravis-Barcala, Maria Gabriela Mattera, Carolina Soliani, Nicolas Bellora, Lars Opgenoorth, Katrin Heer, Maria Veronica Arana
JOURNAL OF EXPERIMENTAL BOTANY
(2020)
Article
Multidisciplinary Sciences
Elisabet Martinez-Sancho, Lenka Slamova, Sandro Morganti, Claudio Grefen, Barbara Carvalho, Benjamin Dauphin, Christian Rellstab, Felix Gugerli, Lars Opgenoorth, Katrin Heer, Florian Knutzen, Georg von Arx, Fernando Valladares, Stephen Cavers, Bruno Fady, Ricardo Alia, Filippos Aravanopoulos, Camilla Avanzi, Francesca Bagnoli, Evangelos Barbas, Catherine Bastien, Raquel Benavides, Frederic Bernier, Guillaume Bodineau, Cristina C. Bastias, Jean-Paul Charpentier, Jose M. Climent, Marianne Correard, Florence Courdier, Darius Danusevicius, Anna-Maria Farsakoglou, Jose M. Garcia del Barrio, Olivier Gilg, Santiago C. Gonzalez-Martinez, Alan Gray, Christoph Hartleitner, Agathe Hurel, Arnaud Jouineau, Katri Kaerkkaeinen, Sonja T. Kujala, Mariaceleste Labriola, Martin Lascoux, Marlene Lefebvre, Vincent Lejeune, Mirko Liesebach, Ermioni Malliarou, Nicolas Mariotte, Silvia Matesanz, Tor Myking, Eduardo Notivol, Birte Pakull, Andrea Piotti, Mehdi Pringarbe, Tanja Pyhaejaervi, Annie Raffin, Jose A. Ramirez-Valiente, Kurt Ramskogler, Juan J. Robledo-Arnuncio, Outi Savolainen, Silvio Schueler, Vladimir Semerikov, Ilaria Spanu, Jean Thevenet, Mari Mette Tollefsrud, Norbert Turion, Dominique Veisse, Giovanni Giuseppe Vendramin, Marc Villar, Johan Westin, Patrick Fonti
Article
Plant Sciences
Qien Li, Xiao Guo, Junfeng Niu, Dongzhu Duojie, Xianjia Li, Lars Opgenoorth, Jiabin Zou
FRONTIERS IN PLANT SCIENCE
(2020)
Article
Plant Sciences
Jose Alberto Ramirez-Valiente, Aida Sole-Medina, Tanja Pyhajarvi, Outi Savolainen, Sandra Cervantes, Robert Kesalahti, Sonja T. Kujala, Timo Kumpula, Katrin Heer, Lars Opgenoorth, Jan Siebertz, Darius Danusevicius, Eduardo Notivol, Raquel Benavides, Juan Jose Robledo-Arnuncio
Summary: The study revealed significant phenotypic plasticity and among-population genetic variation for seed mass, emergence time, and early growth rate in Pinus sylvestris along the latitudinal gradient in Europe. Climate-driven directional selection was found for higher seed mass and earlier emergence time, while the form of selection on seedling growth rates differed among sites and populations. Evidence of adaptive and maladaptive phenotypic plasticity was found for emergence time and early growth rate, respectively, indicating the influence of climate on selection patterns.
Article
Plant Sciences
Jibin Miao, Perla Farhat, Wentao Wang, Markus Ruhsam, Richard Milne, Heng Yang, Sonam Tso, Jialiang Li, Jingjing Xu, Lars Opgenoorth, Georg Miehe, Kangshan Mao
Summary: This study explores the genetic variation, speciation, and demographic history of two narrow-endemic juniper species from the Qinghai-Tibet Plateau. The results show that the two species diverged in the late Pliocene and continued interspecific gene flow until the Last Glacial Maximum. Additionally, it highlights differences in habitat adaptation, genetic diversity, and genetic load between the two species.
Editorial Material
Biochemistry & Molecular Biology
Lars Opgenoorth, Christian Rellstab
Summary: The study of drought resistance in white spruce utilized multiple data sources and analytical approaches to identify candidate genes involved in growth and resistance to extreme drought events, showcasing how diverse datasets can provide complementary evidence to overcome challenges in the research field.
Article
Biochemistry & Molecular Biology
Maria Hohn, Camilla Avanzi, Bruno Fady, Katrin Heer, Lars Opgenoorth, Andrea Piotti, Flaviu Popescu, Dragos Postolache, Giovanni G. Vendramin, Katalin Csillery
Summary: Genetic diversity within silver fir populations was found to be more recent in high elevation habitats across the species range. Paternity analysis revealed a stronger FSGS in seedlings than in adults, suggesting that FSGS may conserve the signature of demographic changes for several generations.
Article
Plant Sciences
Jose Alberto Ramirez-Valiente, Aida Sole-Medina, Tanja Pyhajarvi, Outi Savolainen, Katrin Heer, Lars Opgenoorth, Darius Danusevicius, Juan Jose Robledo-Arnuncio
Summary: Contrasting temperature regimes play an important role in driving the divergent evolution of Pinus sylvestris populations at early-life stages, with populations showing higher seedling survival and growth at temperatures similar to their home environment. Northern populations experienced lower survival and growth at warmer sites.
Article
Multidisciplinary Sciences
Lars Opgenoorth, Sylvia Hofmann, Joachim Schmidt
Summary: This study re-evaluated molecular clock analyses, resetting it based on fossil evidence and the Gondwanan split. By recalibrating and improving prior choices, the origin of the genus Carabus was found to be roughly 30 million years older than previously thought.
Article
Biochemistry & Molecular Biology
Melanie Zacharias, Timo Pampuch, Benjamin Dauphin, Lars Opgenoorth, Carl Roland, Martin Schnittler, Martin Wilmking, Manuela Bog, Katrin Heer
Summary: Climate change is causing more frequent and intense drought events in boreal forests, which have significant impacts on tree growth and survival. Understanding how forests cope with drought stress and the genetic basis of these reactions is crucial for future forest management and conservation. In this study, we investigated white spruce populations in Alaska and found that the growth reaction to drought stress varied among populations located at different treeline positions. We also identified genes associated with drought tolerance traits, highlighting their importance for the establishment and persistence of future forests under climate change. These findings suggest that drought adaptation acts on a local scale and that different populations may be unevenly affected by climate change.
Article
Forestry
Shahla Asgharinia, Martin Leberecht, Luca Belelli Marchesini, Nicolas Friess, Damiano Gianelle, Thomas Nauss, Lars Opgenoorth, Jim Yates, Riccardo Valentini
Summary: A new multifunctional device called TreeTalker was developed to monitor real-time ecophysical and biological parameters of individual trees and climatic variables related to their surrounding environment. The device records continuous stem water content to study the vulnerability of trees to climatic stress.
Article
Zoology
Yeshitla Merene, Wolfgang Lorenz, Lars Opgenoorth, Yitbarek Woldehawariat, Joachim Schmidt
Summary: A provisional checklist and synopsis of occurrence data for ground and tiger beetles in Ethiopia is presented, showing a total of 878 species, of which approximately 36% are endemic or potentially endemic to Ethiopia. Distributional maps and an annotated gazetteer of collection localities are provided.